Complex 6v39
Legend
Pocket colors by molecule type
RNA
Protein
DNA
These colors appear when a pocket is selected (the structure fades to show the pocket surface). Colors from the molecule-type palette (RNA / protein / DNA).
System information
| Experimental technique | Electron Microscopy |
| Experimental resolution | 3.04 |
| System mass | 2163.82 kDa |
| Deposition year | 2019 |
| Molecule type | RNA/Protein |
| # RNA entities | 1 |
| Organism | Acinetobacter |
| RCSB PDB Entry | 6v39 |
| Reference | Morgan Christopher E., Huang Wei, Rudin Susan D., Taylor Derek J., Kirby James E., Bonomo Robert A., Yu Edward W.. 2020. Cryo-electron Microscopy Structure of the Acinetobacter baumannii 70S Ribosome and Implications for New Antibiotic Development mBio |
| Equivalence Class |
NR_all_96169.5
BGSU version: 4.52 |
Pockets List
Legend
Cell colors for SiteScore and D Score:
Favourable
Intermediate
Unfavourable
Not available
| Score | Threshold | Meaning |
|---|---|---|
| SiteScore | < 0.8 | Non-drug binding site |
| SiteScore | 0.8 – 1.0 | Potential drug binding site |
| SiteScore | > 1.0 | Promising binding site |
| D Score | < 0.83 | Undruggable |
| D Score | 0.83 – 0.98 | Difficult |
| D Score | > 0.98 | Druggable |
Tick a pocket below to highlight it in the 3D structure above.
| Compound | FME |
| Residue | . / 3001 |
| Chain | CB / AN1 |
| Non-redundant | True |
| Interacting RNA chains | E/AN1 |
| RNA environment detailled | RNA-only |
| RNA environment global | RNA |
| RNA family chains | E/AN1: rRNA |
| RNA family global | rRNA |
| Volume | 776.90 Å3 |
| Hydrophobicity | 0.410 |
| Hydrophilicity | 1.054 |
| Buriedness | 0.726 |
| Don/acc character | 1.965 |
| SiteScore | 1.169 |
| D Score | 1.032 |
| Kd | — |