HARIBOSS

Harnessing RIBOnucleic acid - Small molecules Structures

Complex 6ord

System information

Experimental technique X-ray
Experimental resolution 3.10
System mass 4500.83 kDa
Deposition year 2019
Molecule type RNA/Protein
# RNA entities 1
Organism Thermus
RCSB PDB Entry 6ord
Reference Nguyen Ha An, Sunita S., Dunham Christine M.. . Disruption of evolutionarily correlated tRNA elements impairs accurate decoding Proceedings of the National Academy of Sciences
Equivalence Class NR_all_65795.87
BGSU version: 4.49

Compound PAR
Residue . / 1821
Chain SL / QA
Non-redundant True
Interacting RNA chains A/QA
RNA environment detailled protein
RNA environment global RNA/Protein
RNA family chains A/QA: rRNA
RNA family global rRNA
Volume 607.45 Å3
Hydrophobicity 0.074
Hydrophilicity 1.379
Buriedness 0.697
Don/acc character 1.676
SiteScore 0.999
D Score 0.908
Kd

Compound PAR
Residue . / 1794
Chain VYA / XA
Non-redundant True
Interacting RNA chains DB/XA
RNA environment detailled RNA-only
RNA environment global RNA
RNA family chains DB/XA: rRNA
RNA family global rRNA
Volume 385.53 Å3
Hydrophobicity 0.107
Hydrophilicity 1.159
Buriedness 0.703
Don/acc character 2.189
SiteScore 0.981
D Score 0.955
Kd