Complex 6of6
Legend
Pocket colors by molecule type
RNA
Protein
DNA
These colors appear when a pocket is selected (the structure fades to show the pocket surface). Colors from the molecule-type palette (RNA / protein / DNA).
System information
| Experimental technique | X-ray |
| Experimental resolution | 3.20 |
| System mass | 4529.24 kDa |
| Deposition year | 2019 |
| Molecule type | RNA/Protein |
| # RNA entities | 1 |
| Organism | Thermus |
| RCSB PDB Entry | 6of6 |
| Reference | Nguyen Ha An, Sunita S., Dunham Christine M.. 2020. Disruption of evolutionarily correlated tRNA elements impairs accurate decoding Proceedings of the National Academy of Sciences |
| Equivalence Class |
NR_all_65795.87,
NR_all_97519.80,
NR_all_20585.6
BGSU version: 4.52 |
Pockets List
Legend
Cell colors for SiteScore and D Score:
Favourable
Intermediate
Unfavourable
Not available
| Score | Threshold | Meaning |
|---|---|---|
| SiteScore | < 0.8 | Non-drug binding site |
| SiteScore | 0.8 – 1.0 | Potential drug binding site |
| SiteScore | > 1.0 | Promising binding site |
| D Score | < 0.83 | Undruggable |
| D Score | 0.83 – 0.98 | Difficult |
| D Score | > 0.98 | Druggable |
Tick a pocket below to highlight it in the 3D structure above.
| Compound | AMP |
| Residue | . / 101 |
| Chain | TI / QY |
| Non-redundant | True |
| Interacting RNA chains | JA/RA, Y/QY |
| RNA environment detailled | ion |
| RNA environment global | RNA |
| RNA family chains | Y/QY: tRNA, JA/RA: rRNA |
| RNA family global | multiple |
| Volume | 256.56 Å3 |
| Hydrophobicity | 0.469 |
| Hydrophilicity | 1.043 |
| Buriedness | 0.686 |
| Don/acc character | 0.738 |
| SiteScore | 1.142 |
| D Score | 1.011 |
| Kd | — |
| Compound | PAR |
| Residue | . / 1711 |
| Chain | OH / QA |
| Non-redundant | True |
| Interacting RNA chains | A/QA |
| RNA environment detailled | RNA-only |
| RNA environment global | RNA |
| RNA family chains | A/QA: rRNA |
| RNA family global | rRNA |
| Volume | 302.18 Å3 |
| Hydrophobicity | 0.150 |
| Hydrophilicity | 1.061 |
| Buriedness | 0.690 |
| Don/acc character | 2.694 |
| SiteScore | 1.042 |
| D Score | 0.877 |
| Kd | — |
| Compound | PAR |
| Residue | . / 1717 |
| Chain | YCA / XA |
| Non-redundant | True |
| Interacting RNA chains | EB/XA |
| RNA environment detailled | RNA-only |
| RNA environment global | RNA |
| RNA family chains | EB/XA: rRNA |
| RNA family global | rRNA |
| Volume | 314.53 Å3 |
| Hydrophobicity | 0.148 |
| Hydrophilicity | 1.068 |
| Buriedness | 0.684 |
| Don/acc character | 2.703 |
| SiteScore | 1.080 |
| D Score | 0.924 |
| Kd | — |