HARIBOSS

Harnessing RIBOnucleic acid - Small molecules Structures

Complex 6of6

System information

Experimental technique X-ray
Experimental resolution 3.20
System mass 4529.24 kDa
Deposition year 2019
Molecule type RNA/Protein
# RNA entities 7
Organism Thermus
RCSB PDB Entry 6of6
Reference Nguyen Ha An, Sunita S., Dunham Christine M.. . Disruption of evolutionarily correlated tRNA elements impairs accurate decoding Proceedings of the National Academy of Sciences

Compound AMP
Residue . / 101
Chain TI / QY
Non-redundant True
Interacting RNA chains Y/QY, JA/RA
Volume 943.59 Å3
Hydrophobicity 0.455
Hydrophilicity 1.176
Buriedness 0.758
Don/acc character 1.669
SiteScore 1.040
D Score 1.011

Compound PAR
Residue . / 1711
Chain OH / QA
Non-redundant False
Interacting RNA chains A/QA
Volume 293.26 Å3
Hydrophobicity 0.160
Hydrophilicity 1.083
Buriedness 0.688
Don/acc character 2.736
SiteScore 0.903
D Score 0.884

Compound PAR
Residue . / 1717
Chain YCA / XA
Non-redundant False
Interacting RNA chains EB/XA
Volume 309.04 Å3
Hydrophobicity 0.161
Hydrophilicity 1.103
Buriedness 0.679
Don/acc character 2.685
SiteScore 0.946
D Score 0.935