Complex 6of6
System information
| Experimental technique | X-ray |
| Experimental resolution | 3.20 |
| System mass | 4529.24 kDa |
| Deposition year | 2019 |
| Molecule type | RNA/Protein |
| # RNA entities | 1 |
| Organism | Thermus |
| RCSB PDB Entry | 6of6 |
| Reference | Nguyen Ha An, Sunita S., Dunham Christine M.. . Disruption of evolutionarily correlated tRNA elements impairs accurate decoding Proceedings of the National Academy of Sciences |
| Equivalence Class |
NR_all_65795.87,
NR_all_97519.80,
NR_all_20585.6
BGSU version: 4.49 |
| Compound | AMP |
| Residue | . / 101 |
| Chain | TI / QY |
| Non-redundant | True |
| Interacting RNA chains | JA/RA, Y/QY |
| RNA environment detailled | ion |
| RNA environment global | RNA |
| RNA family chains | Y/QY: rRNA, JA/RA: rRNA |
| RNA family global | rRNA |
| Volume | 256.56 Å3 |
| Hydrophobicity | 0.469 |
| Hydrophilicity | 1.043 |
| Buriedness | 0.686 |
| Don/acc character | 0.738 |
| SiteScore | 1.142 |
| D Score | 1.011 |
| Kd | — |
| Compound | PAR |
| Residue | . / 1711 |
| Chain | OH / QA |
| Non-redundant | True |
| Interacting RNA chains | A/QA |
| RNA environment detailled | RNA-only |
| RNA environment global | RNA |
| RNA family chains | A/QA: rRNA |
| RNA family global | rRNA |
| Volume | 302.18 Å3 |
| Hydrophobicity | 0.150 |
| Hydrophilicity | 1.061 |
| Buriedness | 0.690 |
| Don/acc character | 2.694 |
| SiteScore | 1.042 |
| D Score | 0.877 |
| Kd | — |
| Compound | PAR |
| Residue | . / 1717 |
| Chain | YCA / XA |
| Non-redundant | True |
| Interacting RNA chains | EB/XA |
| RNA environment detailled | RNA-only |
| RNA environment global | RNA |
| RNA family chains | EB/XA: rRNA |
| RNA family global | rRNA |
| Volume | 314.53 Å3 |
| Hydrophobicity | 0.148 |
| Hydrophilicity | 1.068 |
| Buriedness | 0.684 |
| Don/acc character | 2.703 |
| SiteScore | 1.080 |
| D Score | 0.924 |
| Kd | — |