HARIBOSS

Harnessing RIBOnucleic acid - Small molecules Structures

Complex 6az1

System information

Experimental technique Electron Microscopy
Experimental resolution 2.70
System mass 1416.66 kDa
Deposition year 2017
Molecule type RNA/Protein
# RNA entities 1
Organism Escherichia
RCSB PDB Entry 6az1
Reference Shalev-Benami Moran, Zhang Yan, Rozenberg Haim, Nobe Yuko, Taoka Masato, Matzov Donna, Zimmerman Ella, Bashan Anat, Isobe Toshiaki, Jaffe Charles L., Yonath Ada, Skiniotis Georgios. . Atomic resolution snapshot of Leishmania ribosome inhibition by the aminoglycoside paromomycin Nature Communications

Compound PAR
Residue . / 2302
Chain QA / 1
Non-redundant True
Interacting RNA chains HA/1
Volume 276.12 Å3
Hydrophobicity 0.087
Hydrophilicity 1.261
Buriedness 0.643
Don/acc character 1.287
SiteScore 0.948
D Score 0.703

Compound PAR
Residue . / 2304
Chain SA / 1
Non-redundant True
Interacting RNA chains HA/1
Volume 251.08 Å3
Hydrophobicity 0.149
Hydrophilicity 1.227
Buriedness 0.781
Don/acc character 1.192
SiteScore 0.918
D Score 0.640

Compound PAR
Residue . / 2305
Chain TA / 1
Non-redundant True
Interacting RNA chains HA/1
Volume 514.84 Å3
Hydrophobicity 0.096
Hydrophilicity 0.802
Buriedness 0.661
Don/acc character 3.433
SiteScore 1.034
D Score 0.899

Compound PAR
Residue . / 2306
Chain UA / 1
Non-redundant True
Interacting RNA chains HA/1
Volume 279.89 Å3
Hydrophobicity 0.067
Hydrophilicity 1.144
Buriedness 0.748
Don/acc character 1.858
SiteScore 0.890
D Score 0.640

Compound PAR
Residue . / 2307
Chain VA / 1
Non-redundant True
Interacting RNA chains HA/1
Volume 168.76 Å3
Hydrophobicity 0.557
Hydrophilicity 0.981
Buriedness 0.718
Don/acc character 2.874
SiteScore 0.843
D Score 0.626