HARIBOSS

Harnessing RIBOnucleic acid - Small molecules Structures

Complex 5we4

System information

Experimental technique Electron Microscopy
Experimental resolution 3.10
System mass 2300.95 kDa
Deposition year 2017
Molecule type RNA/Protein
# RNA entities 1
Organism Escherichia
RCSB PDB Entry 5we4
Reference Fislage Marcus, Zhang Jingji, Brown Zuben Patrick, Mandava Chandra Sekhar, Sanyal Suparna, Ehrenberg Måns, Frank Joachim. . Cryo-EM shows stages of initial codon selection on the ribosome by aa-tRNA in ternary complex with GTP and the GTPase-deficient EF-TuH84A Nucleic Acids Research

Compound FME
Residue . / 101
Chain BLB / v
Non-redundant False
Interacting RNA chains A/A, CB/v
Volume 628.03 Å3
Hydrophobicity 0.204
Hydrophilicity 1.392
Buriedness 0.756
Don/acc character 1.164
SiteScore 1.189
D Score 0.940

Compound GNP
Residue . / 402
Chain PLB / z
Non-redundant True
Interacting RNA chains A/A
Volume 580.36 Å3
Hydrophobicity 0.089
Hydrophilicity 2.137
Buriedness 0.785
Don/acc character 0.501
SiteScore 1.058
D Score 0.715

Compound PHE
Residue . / 401
Chain OLB / z
Non-redundant True
Interacting RNA chains FB/y
Volume 427.72 Å3
Hydrophobicity 0.472
Hydrophilicity 1.401
Buriedness 0.893
Don/acc character 0.822
SiteScore 1.131
D Score 1.019