Complex 5o61
Legend
Pocket colors by molecule type
RNA
Protein
DNA
These colors appear when a pocket is selected (the structure fades to show the pocket surface). Colors from the molecule-type palette (RNA / protein / DNA).
System information
| Experimental technique | Electron Microscopy |
| Experimental resolution | 3.31 |
| System mass | 2322.20 kDa |
| Deposition year | 2017 |
| Molecule type | RNA/Protein |
| # RNA entities | 1 |
| Organism | Mycolicibacterium |
| RCSB PDB Entry | 5o61 |
| Reference | Hentschel Jendrik, Burnside Chloe, Mignot Ingrid, Leibundgut Marc, Boehringer Daniel, Ban Nenad. 2017. The Complete Structure of the Mycobacterium smegmatis 70S Ribosome Cell Reports |
| Equivalence Class |
NR_all_76090.17,
NR_all_89181.12,
NR_all_92130.5
BGSU version: 4.52 |
Pockets List
Legend
Cell colors for SiteScore and D Score:
Favourable
Intermediate
Unfavourable
Not available
| Score | Threshold | Meaning |
|---|---|---|
| SiteScore | < 0.8 | Non-drug binding site |
| SiteScore | 0.8 – 1.0 | Potential drug binding site |
| SiteScore | > 1.0 | Promising binding site |
| D Score | < 0.83 | Undruggable |
| D Score | 0.83 – 0.98 | Difficult |
| D Score | > 0.98 | Druggable |
Tick a pocket below to highlight it in the 3D structure above.
| Compound | PHE |
| Residue | . / 101 |
| Chain | MZ / BW |
| Non-redundant | True |
| Interacting RNA chains | DB/BW, B/A |
| RNA environment detailled | RNA-only |
| RNA environment global | RNA |
| RNA family chains | B/A: rRNA, DB/BW: tRNA |
| RNA family global | multiple |
| Volume | 516.90 Å3 |
| Hydrophobicity | 0.569 |
| Hydrophilicity | 0.872 |
| Buriedness | 0.740 |
| Don/acc character | 2.121 |
| SiteScore | 1.203 |
| D Score | 1.090 |
| Kd | — |