HARIBOSS

Harnessing RIBOnucleic acid - Small molecules Structures

Complex 5ib7

System information

Experimental technique X-ray
Experimental resolution 2.99
System mass 4540.51 kDa
Deposition year 2016
Molecule type RNA/Protein
# RNA entities 5
Organism Thermus
RCSB PDB Entry 5ib7
Reference Rozov Alexey, Westhof Eric, Yusupov Marat, Yusupova Gulnara. . The ribosome prohibits the G•U wobble geometry at the first position of the codon–anticodon helix Nucleic Acids Research

Compound PAR
Residue . / 1702
Chain ZHA / 1G
Non-redundant False
Interacting RNA chains EB/1G
Volume 300.81 Å3
Hydrophobicity 0.092
Hydrophilicity 1.063
Buriedness 0.671
Don/acc character 1.018
SiteScore 0.929
D Score 0.928

Compound SPE
Residue . / 1703
Chain AIA / 1G
Non-redundant False
Interacting RNA chains EB/1G
Volume -
Hydrophobicity -
Hydrophilicity -
Buriedness -
Don/acc character -
SiteScore -
D Score -

Compound SPE
Residue . / 3436
Chain EZA / 14
Non-redundant True
Interacting RNA chains DC/14
Volume 495.63 Å3
Hydrophobicity 0.083
Hydrophilicity 1.389
Buriedness 0.687
Don/acc character 1.064
SiteScore 0.993
D Score 0.900