HARIBOSS

Harnessing RIBOnucleic acid - Small molecules Structures

Complex 5ib7

System information

Experimental technique X-ray
Experimental resolution 2.99
System mass 4540.51 kDa
Deposition year 2016
Molecule type RNA/Protein
# RNA entities 1
Organism Thermus
RCSB PDB Entry 5ib7
Reference Rozov Alexey, Westhof Eric, Yusupov Marat, Yusupova Gulnara. . The ribosome prohibits the G•U wobble geometry at the first position of the codon–anticodon helix Nucleic Acids Research

Compound PAR
Residue . / 1702
Chain ZHA / 1G
Non-redundant True
Interacting RNA chains EB/1G
Volume 593.05 Å3
Hydrophobicity 0.083
Hydrophilicity 1.081
Buriedness 0.650
Don/acc character 2.189
SiteScore 1.118
D Score 0.978

Compound SPE
Residue . / 1703
Chain AIA / 1G
Non-redundant True
Interacting RNA chains EB/1G
Volume -
Hydrophobicity -
Hydrophilicity -
Buriedness -
Don/acc character -
SiteScore -
D Score -

Compound SPE
Residue . / 3436
Chain EZA / 14
Non-redundant True
Interacting RNA chains DC/14
Volume 501.47 Å3
Hydrophobicity 0.038
Hydrophilicity 1.286
Buriedness 0.675
Don/acc character 1.712
SiteScore 1.135
D Score 0.926