Complex 5el6
Legend
Pocket colors by molecule type
RNA
Protein
DNA
These colors appear when a pocket is selected (the structure fades to show the pocket surface). Colors from the molecule-type palette (RNA / protein / DNA).
System information
| Experimental technique | X-ray |
| Experimental resolution | 3.10 |
| System mass | 4548.75 kDa |
| Deposition year | 2015 |
| Molecule type | RNA/Protein |
| # RNA entities | 1 |
| Organism | Thermus |
| RCSB PDB Entry | 5el6 |
| Reference | Rozov Alexey, Demeshkina Natalia, Khusainov Iskander, Westhof Eric, Yusupov Marat, Yusupova Gulnara. 2016. Novel base-pairing interactions at the tRNA wobble position crucial for accurate reading of the genetic code Nature Communications |
| Equivalence Class |
NR_all_65795.87
BGSU version: 4.52 |
Pockets List
Legend
Cell colors for SiteScore and D Score:
Favourable
Intermediate
Unfavourable
Not available
| Score | Threshold | Meaning |
|---|---|---|
| SiteScore | < 0.8 | Non-drug binding site |
| SiteScore | 0.8 – 1.0 | Potential drug binding site |
| SiteScore | > 1.0 | Promising binding site |
| D Score | < 0.83 | Undruggable |
| D Score | 0.83 – 0.98 | Difficult |
| D Score | > 0.98 | Druggable |
Tick a pocket below to highlight it in the 3D structure above.
| Compound | PAR |
| Residue | . / 1730 |
| Chain | EI / 13 |
| Non-redundant | True |
| Interacting RNA chains | A/13 |
| RNA environment detailled | RNA-only |
| RNA environment global | RNA |
| RNA family chains | A/13: rRNA |
| RNA family global | rRNA |
| Volume | 338.20 Å3 |
| Hydrophobicity | 0.065 |
| Hydrophilicity | 1.073 |
| Buriedness | 0.698 |
| Don/acc character | 2.493 |
| SiteScore | 1.085 |
| D Score | 0.925 |
| Kd | — |
| Compound | PAR |
| Residue | . / 1681 |
| Chain | GDA / 1G |
| Non-redundant | True |
| Interacting RNA chains | DB/1G |
| RNA environment detailled | RNA-only |
| RNA environment global | RNA |
| RNA family chains | DB/1G: rRNA |
| RNA family global | rRNA |
| Volume | 498.72 Å3 |
| Hydrophobicity | 0.044 |
| Hydrophilicity | 1.125 |
| Buriedness | 0.660 |
| Don/acc character | 1.935 |
| SiteScore | 1.124 |
| D Score | 0.969 |
| Kd | — |