Complex 5bjp
Legend
Pocket colors by molecule type
RNA
Protein
DNA
These colors appear when a pocket is selected (the structure fades to show the pocket surface). Colors from the molecule-type palette (RNA / protein / DNA).
System information
| Experimental technique | X-ray |
| Experimental resolution | 2.51 |
| System mass | 24.54 kDa |
| Deposition year | 2016 |
| Molecule type | RNA |
| # RNA entities | 1 |
| Organism | N/A |
| RCSB PDB Entry | 5bjp |
| Reference | Warner Katherine Deigan, Sjekloća Ljiljana, Song Wenjiao, Filonov Grigory S, Jaffrey Samie R, Ferré-D'Amaré Adrian R. 2017. A homodimer interface without base pairs in an RNA mimic of red fluorescent protein Nature Chemical Biology |
| Equivalence Class |
NR_all_73441.3
BGSU version: 4.52 |
Pockets List
Legend
Cell colors for SiteScore and D Score:
Favourable
Intermediate
Unfavourable
Not available
| Score | Threshold | Meaning |
|---|---|---|
| SiteScore | < 0.8 | Non-drug binding site |
| SiteScore | 0.8 – 1.0 | Potential drug binding site |
| SiteScore | > 1.0 | Promising binding site |
| D Score | < 0.83 | Undruggable |
| D Score | 0.83 – 0.98 | Difficult |
| D Score | > 0.98 | Druggable |
Tick a pocket below to highlight it in the 3D structure above.
| Compound | 747 |
| Residue | . / 104 |
| Chain | L / Y |
| Non-redundant | True |
| Interacting RNA chains | A/E, B/Y |
| RNA environment detailled | ion |
| RNA environment global | RNA |
| RNA family chains | A/E: aptamer_rna, B/Y: aptamer_rna |
| RNA family global | aptamer_rna |
| Volume | 236.67 Å3 |
| Hydrophobicity | 2.166 |
| Hydrophilicity | 0.810 |
| Buriedness | 0.814 |
| Don/acc character | 1.159 |
| SiteScore | 1.215 |
| D Score | 1.091 |
| Kd | — |