HARIBOSS

Harnessing RIBOnucleic acid - Small molecules Structures

Complex 4y1m

System information

Experimental technique X-ray
Experimental resolution 3.00
System mass 76.14 kDa
Deposition year 2015
Molecule type RNA
# RNA entities 1
Organism Escherichia
RCSB PDB Entry 4y1m
Reference Price Ian R., Gaballa Ahmed, Ding Fang, Helmann John D., Ke Ailong. . Mn2+-Sensing Mechanisms of yybP-ykoY Orphan Riboswitches Molecular Cell

Compound GTP
Residue . / 212
Chain N / B
Non-redundant True
Interacting RNA chains A/B
Volume 76.15 Å3
Hydrophobicity 0.089
Hydrophilicity 0.614
Buriedness 0.505
Don/acc character 2.467
SiteScore 0.803
D Score 0.659

Compound GTP
Residue . / 208
Chain GB / A
Non-redundant True
Interacting RNA chains B/A
Volume 89.52 Å3
Hydrophobicity 0.052
Hydrophilicity 0.740
Buriedness 0.472
Don/acc character 1.495
SiteScore 0.867
D Score 0.739