Complex 4x65
System information
| Experimental technique | X-ray |
| Experimental resolution | 3.35 |
| System mass | 786.29 kDa |
| Deposition year | 2014 |
| Molecule type | RNA/Protein |
| # RNA entities | 1 |
| Organism | Thermus |
| RCSB PDB Entry | 4x65 |
| Reference | Choi Junhong, Ieong Ka-Weng, Demirci Hasan, Chen Jin, Petrov Alexey, Prabhakar Arjun, O'Leary Seán E, Dominissini Dan, Rechavi Gideon, Soltis S Michael, Ehrenberg Måns, Puglisi Joseph D. . N6-methyladenosine in mRNA disrupts tRNA selection and translation-elongation dynamics Nature Structural & Molecular Biology |
| Equivalence Class |
NR_all_65795.87
BGSU version: 4.49 |
| Compound | PAR |
| Residue | . / 1601 |
| Chain | X / A |
| Non-redundant | False |
| Interacting RNA chains | A/A |
| RNA environment detailled | RNA-only |
| RNA environment global | RNA |
| RNA family chains | A/A: rRNA |
| RNA family global | rRNA |
| Volume | 116.28 Å3 |
| Hydrophobicity | 0.151 |
| Hydrophilicity | 0.837 |
| Buriedness | 0.619 |
| Don/acc character | 2.583 |
| SiteScore | 0.648 |
| D Score | 0.605 |
| Kd | — |
| Compound | PAR |
| Residue | . / 1602 |
| Chain | Y / A |
| Non-redundant | True |
| Interacting RNA chains | A/A |
| RNA environment detailled | protein, ion |
| RNA environment global | RNA/Protein |
| RNA family chains | A/A: rRNA |
| RNA family global | rRNA |
| Volume | 268.91 Å3 |
| Hydrophobicity | 0.058 |
| Hydrophilicity | 1.353 |
| Buriedness | 0.789 |
| Don/acc character | 2.350 |
| SiteScore | 0.716 |
| D Score | 0.530 |
| Kd | — |
| Compound | PAR |
| Residue | . / 1603 |
| Chain | Z / A |
| Non-redundant | False |
| Interacting RNA chains | A/A |
| RNA environment detailled | ion |
| RNA environment global | RNA |
| RNA family chains | A/A: rRNA |
| RNA family global | rRNA |
| Volume | 763.18 Å3 |
| Hydrophobicity | 0.043 |
| Hydrophilicity | 1.643 |
| Buriedness | 0.796 |
| Don/acc character | 1.103 |
| SiteScore | 0.867 |
| D Score | 0.863 |
| Kd | — |
| Compound | PAR |
| Residue | . / 1604 |
| Chain | AA / A |
| Non-redundant | False |
| Interacting RNA chains | A/A |
| RNA environment detailled | protein |
| RNA environment global | RNA/Protein |
| RNA family chains | A/A: rRNA |
| RNA family global | rRNA |
| Volume | 595.79 Å3 |
| Hydrophobicity | 0.141 |
| Hydrophilicity | 1.613 |
| Buriedness | 0.722 |
| Don/acc character | 1.121 |
| SiteScore | 1.016 |
| D Score | 0.847 |
| Kd | — |
| Compound | PAR |
| Residue | . / 1605 |
| Chain | BA / A |
| Non-redundant | True |
| Interacting RNA chains | A/A |
| RNA environment detailled | protein, ion |
| RNA environment global | RNA/Protein |
| RNA family chains | A/A: rRNA |
| RNA family global | rRNA |
| Volume | 406.46 Å3 |
| Hydrophobicity | 0.020 |
| Hydrophilicity | 2.280 |
| Buriedness | 0.775 |
| Don/acc character | 0.706 |
| SiteScore | 0.831 |
| D Score | 0.379 |
| Kd | — |
| Compound | PAR |
| Residue | . / 1606 |
| Chain | CA / A |
| Non-redundant | False |
| Interacting RNA chains | A/A |
| RNA environment detailled | ion |
| RNA environment global | RNA |
| RNA family chains | A/A: rRNA |
| RNA family global | rRNA |
| Volume | 78.20 Å3 |
| Hydrophobicity | 0.015 |
| Hydrophilicity | 1.221 |
| Buriedness | 0.644 |
| Don/acc character | 1.213 |
| SiteScore | 0.789 |
| D Score | 0.512 |
| Kd | — |