HARIBOSS

Harnessing RIBOnucleic acid - Small molecules Structures

Complex 4x4v

System information

Experimental technique X-ray
Experimental resolution 2.60
System mass 134.06 kDa
Deposition year 2014
Molecule type RNA/Protein
# RNA entities 1
Organism Homo
RCSB PDB Entry 4x4v
Reference Kuhn Claus-D., Wilusz Jeremy E., Zheng Yuxuan, Beal Peter A., Joshua-Tor Leemor. . On-Enzyme Refolding Permits Small RNA and tRNA Surveillance by the CCA-Adding Enzyme Cell

Compound 5GP
Residue . / 502
Chain K / B
Non-redundant True
Interacting RNA chains B/B
Volume 215.75 Å3
Hydrophobicity 0.184
Hydrophilicity 0.959
Buriedness 0.595
Don/acc character 1.277
SiteScore 0.732
D Score 0.709

Compound 5GP
Residue . / 503
Chain L / B
Non-redundant True
Interacting RNA chains B/B
Volume 50.76 Å3
Hydrophobicity 0.000
Hydrophilicity 1.087
Buriedness 0.542
Don/acc character 0.610
SiteScore 0.490
D Score 0.391

Compound 5GP
Residue . / 101
Chain P / D
Non-redundant True
Interacting RNA chains D/D
Volume 44.93 Å3
Hydrophobicity 0.171
Hydrophilicity 1.015
Buriedness 0.604
Don/acc character 1.998
SiteScore 0.416
D Score 0.297

Compound APC
Residue . / 501
Chain E / A
Non-redundant True
Interacting RNA chains B/B
Volume 534.39 Å3
Hydrophobicity 0.060
Hydrophilicity 1.694
Buriedness 0.836
Don/acc character 0.693
SiteScore 1.092
D Score 0.889

Compound APC
Residue . / 501
Chain M / C
Non-redundant True
Interacting RNA chains D/D
Volume 618.77 Å3
Hydrophobicity 0.150
Hydrophilicity 1.510
Buriedness 0.833
Don/acc character 0.592
SiteScore 1.090
D Score 0.947