HARIBOSS

Harnessing RIBOnucleic acid - Small molecules Structures

Complex 4wt8

System information

Experimental technique X-ray
Experimental resolution 3.40
System mass 4460.70 kDa
Deposition year 2014
Molecule type RNA/Protein
# RNA entities 8
Organism Thermus
RCSB PDB Entry 4wt8
Reference Amunts Alexey, Fiedorczuk Karol, Truong Thao T., Chandler Josephine, Greenberg E. Peter, Ramakrishnan V.. . Bactobolin A Binds to a Site on the 70S Ribosome Distinct from Previously Seen Antibiotics Journal of Molecular Biology

Compound 3V6
Residue . / 3001
Chain PD / C1
Non-redundant True
Interacting RNA chains UA/C4, AC/C1
Volume -
Hydrophobicity -
Hydrophilicity -
Buriedness -
Don/acc character -
SiteScore -
D Score -

Compound 3V6
Residue . / 3001
Chain RD / D1
Non-redundant True
Interacting RNA chains LD/D1, EC/D4
Volume 757.00 Å3
Hydrophobicity 0.089
Hydrophilicity 1.187
Buriedness 0.679
Don/acc character 3.129
SiteScore 0.988
D Score 0.961

Compound PAR
Residue . / 1601
Chain ND / Ab
Non-redundant False
Interacting RNA chains V/Ab
Volume 201.34 Å3
Hydrophobicity 0.168
Hydrophilicity 0.905
Buriedness 0.653
Don/acc character 3.096
SiteScore 0.765
D Score 0.741

Compound PAR
Residue . / 1601
Chain OD / Bb
Non-redundant False
Interacting RNA chains X/Bb
Volume 284.35 Å3
Hydrophobicity 0.132
Hydrophilicity 0.951
Buriedness 0.637
Don/acc character 2.714
SiteScore 0.762
D Score 0.737