HARIBOSS

Harnessing RIBOnucleic acid - Small molecules Structures

Complex 4wt8

System information

Experimental technique X-ray
Experimental resolution 3.40
System mass 4460.70 kDa
Deposition year 2014
Molecule type RNA/Protein
# RNA entities 8
Organism Thermus
RCSB PDB Entry 4wt8
Reference Amunts Alexey, Fiedorczuk Karol, Truong Thao T., Chandler Josephine, Greenberg E. Peter, Ramakrishnan V.. . Bactobolin A Binds to a Site on the 70S Ribosome Distinct from Previously Seen Antibiotics Journal of Molecular Biology

Compound 3V6
Residue . / 3001
Chain PD / C1
Non-redundant True
Interacting RNA chains AC/C1, UA/C4
Volume -
Hydrophobicity -
Hydrophilicity -
Buriedness -
Don/acc character -
SiteScore -
D Score -

Compound 3V6
Residue . / 3001
Chain RD / D1
Non-redundant True
Interacting RNA chains EC/D4, LD/D1
Volume 733.68 Å3
Hydrophobicity 0.326
Hydrophilicity 1.018
Buriedness 0.688
Don/acc character 1.363
SiteScore 0.998
D Score 1.021

Compound PAR
Residue . / 1601
Chain ND / Ab
Non-redundant False
Interacting RNA chains V/Ab
Volume 191.74 Å3
Hydrophobicity 0.121
Hydrophilicity 0.873
Buriedness 0.645
Don/acc character 1.369
SiteScore 0.744
D Score 0.719

Compound PAR
Residue . / 1601
Chain OD / Bb
Non-redundant False
Interacting RNA chains X/Bb
Volume 271.66 Å3
Hydrophobicity 0.124
Hydrophilicity 0.893
Buriedness 0.636
Don/acc character 1.560
SiteScore 0.778
D Score 0.762