HARIBOSS

Harnessing RIBOnucleic acid - Small molecules Structures

Complex 4dr4

System information

Experimental technique X-ray
Experimental resolution 3.97
System mass 809.51 kDa
Deposition year 2012
Molecule type RNA/Protein
# RNA entities 2
Organism Thermus
RCSB PDB Entry 4dr4
Reference Demirci Hasan, Murphy Frank, Murphy Eileen, Gregory Steven T., Dahlberg Albert E., Jogl Gerwald. . A structural basis for streptomycin-induced misreading of the genetic code Nature Communications

Compound PAR
Residue . / 1601
Chain X / A
Non-redundant False
Interacting RNA chains A/A
Volume 174.24 Å3
Hydrophobicity 0.488
Hydrophilicity 1.126
Buriedness 0.739
Don/acc character 1.317
SiteScore 0.775
D Score 0.693

Compound PAR
Residue . / 1604
Chain AA / A
Non-redundant False
Interacting RNA chains A/A
Volume 1463.58 Å3
Hydrophobicity 0.062
Hydrophilicity 1.249
Buriedness 0.765
Don/acc character 2.544
SiteScore 1.045
D Score 0.992

Compound PAR
Residue . / 1611
Chain HA / A
Non-redundant False
Interacting RNA chains A/A
Volume 222.95 Å3
Hydrophobicity 0.307
Hydrophilicity 1.108
Buriedness 0.655
Don/acc character 2.050
SiteScore 0.972
D Score 0.972

Compound PAR
Residue . / 1613
Chain JA / A
Non-redundant False
Interacting RNA chains A/A
Volume 41.85 Å3
Hydrophobicity 0.000
Hydrophilicity 2.334
Buriedness 0.917
Don/acc character 0.724
SiteScore 0.741
D Score 0.210

Compound PAR
Residue . / 1615
Chain LA / A
Non-redundant False
Interacting RNA chains A/A
Volume 333.05 Å3
Hydrophobicity 0.002
Hydrophilicity 1.341
Buriedness 0.651
Don/acc character 2.243
SiteScore 0.969
D Score 0.893

Compound PAR
Residue . / 1616
Chain MA / A
Non-redundant True
Interacting RNA chains A/A
Volume -
Hydrophobicity -
Hydrophilicity -
Buriedness -
Don/acc character -
SiteScore -
D Score -

Compound PAR
Residue . / 1618
Chain OA / A
Non-redundant False
Interacting RNA chains A/A
Volume 117.99 Å3
Hydrophobicity 0.379
Hydrophilicity 1.102
Buriedness 0.654
Don/acc character 1.647
SiteScore 0.712
D Score 0.642