HARIBOSS

Harnessing RIBOnucleic acid - Small molecules Structures

Complex 4dr2

System information

Experimental technique X-ray
Experimental resolution 3.25
System mass 802.33 kDa
Deposition year 2012
Molecule type RNA/Protein
# RNA entities 1
Organism Thermus
RCSB PDB Entry 4dr2
Reference Demirci Hasan, Murphy Frank, Murphy Eileen, Gregory Steven T., Dahlberg Albert E., Jogl Gerwald. . A structural basis for streptomycin-induced misreading of the genetic code Nature Communications

Compound PAR
Residue . / 1601
Chain V / A
Non-redundant False
Interacting RNA chains A/A
Volume 149.20 Å3
Hydrophobicity 0.231
Hydrophilicity 1.190
Buriedness 0.716
Don/acc character 0.847
SiteScore 0.700
D Score 0.582

Compound PAR
Residue . / 1604
Chain Y / A
Non-redundant False
Interacting RNA chains A/A
Volume 1418.30 Å3
Hydrophobicity 0.074
Hydrophilicity 1.204
Buriedness 0.748
Don/acc character 2.603
SiteScore 1.033
D Score 0.996

Compound PAR
Residue . / 1608
Chain CA / A
Non-redundant False
Interacting RNA chains A/A
Volume 46.99 Å3
Hydrophobicity 0.000
Hydrophilicity 2.397
Buriedness 0.934
Don/acc character 0.821
SiteScore 0.776
D Score 0.230

Compound PAR
Residue . / 1611
Chain FA / A
Non-redundant True
Interacting RNA chains A/A
Volume -
Hydrophobicity -
Hydrophilicity -
Buriedness -
Don/acc character -
SiteScore -
D Score -

Compound PAR
Residue . / 1613
Chain HA / A
Non-redundant True
Interacting RNA chains A/A
Volume 159.84 Å3
Hydrophobicity 0.390
Hydrophilicity 1.140
Buriedness 0.708
Don/acc character 2.306
SiteScore 0.841
D Score 0.781

Compound PAR
Residue . / 1614
Chain IA / A
Non-redundant False
Interacting RNA chains A/A
Volume 371.47 Å3
Hydrophobicity 0.026
Hydrophilicity 1.355
Buriedness 0.673
Don/acc character 1.882
SiteScore 0.983
D Score 0.902

Compound PAR
Residue . / 1616
Chain KA / A
Non-redundant True
Interacting RNA chains A/A
Volume 267.88 Å3
Hydrophobicity 0.241
Hydrophilicity 1.208
Buriedness 0.723
Don/acc character 0.985
SiteScore 0.906
D Score 0.838

Compound PAR
Residue . / 1617
Chain LA / A
Non-redundant True
Interacting RNA chains A/A
Volume 237.36 Å3
Hydrophobicity 0.233
Hydrophilicity 1.084
Buriedness 0.646
Don/acc character 1.926
SiteScore 0.965
D Score 0.974