HARIBOSS

Harnessing RIBOnucleic acid - Small molecules Structures

Complex 3k0j

System information

Experimental technique X-ray
Experimental resolution 3.10
System mass 101.40 kDa
Deposition year 2009
Molecule type RNA/Protein
# RNA entities 1
Organism Escherichia
RCSB PDB Entry 3k0j
Reference Kulshina Nadia, Edwards Thomas E., Ferré-D'Amaré Adrian R.. . Thermodynamic analysis of ligand binding and ligand binding-induced tertiary structure formation by the thiamine pyrophosphate riboswitch RNA

Compound TPP
Residue . / 601
Chain G / E
Non-redundant False
Interacting RNA chains E/E
Volume 781.01 Å3
Hydrophobicity 0.317
Hydrophilicity 1.265
Buriedness 0.742
Don/acc character 1.626
SiteScore 1.029
D Score 0.973

Compound TPP
Residue . / 602
Chain N / F
Non-redundant False
Interacting RNA chains F/F
Volume 701.43 Å3
Hydrophobicity 0.394
Hydrophilicity 1.095
Buriedness 0.720
Don/acc character 1.146
SiteScore 1.015
D Score 1.015