HARIBOSS

Harnessing RIBOnucleic acid - Small molecules Structures

Complex 3k0j

System information

Experimental technique X-ray
Experimental resolution 3.10
System mass 101.40 kDa
Deposition year 2009
Molecule type RNA/Protein
# RNA entities 1
Organism Escherichia
RCSB PDB Entry 3k0j
Reference Kulshina Nadia, Edwards Thomas E., Ferré-D'Amaré Adrian R.. . Thermodynamic analysis of ligand binding and ligand binding-induced tertiary structure formation by the thiamine pyrophosphate riboswitch RNA

Compound TPP
Residue . / 601
Chain G / E
Non-redundant True
Interacting RNA chains E/E
Volume 765.23 Å3
Hydrophobicity 0.348
Hydrophilicity 1.351
Buriedness 0.747
Don/acc character 0.992
SiteScore 1.033
D Score 0.948

Compound TPP
Residue . / 602
Chain N / F
Non-redundant False
Interacting RNA chains F/F
Volume 683.26 Å3
Hydrophobicity 0.491
Hydrophilicity 1.155
Buriedness 0.724
Don/acc character 0.814
SiteScore 1.017
D Score 0.998