HARIBOSS

Harnessing RIBOnucleic acid - Small molecules Structures

Complex 3d2g

System information

Experimental technique X-ray
Experimental resolution 2.25
System mass 51.01 kDa
Deposition year 2008
Molecule type RNA
# RNA entities 1
Organism Arabidopsis
RCSB PDB Entry 3d2g
Reference Thore Stéphane, Frick Christian, Ban Nenad. . Structural Basis of Thiamine Pyrophosphate Analogues Binding to the Eukaryotic Riboswitch Journal of the American Chemical Society

Compound TPP
Residue . / 83
Chain H / A
Non-redundant True
Interacting RNA chains A/A
RNA environment detailled ion
RNA environment global RNA
RNA family chains A/A: riboswitch
RNA family global riboswitch
Volume 789.93 Å3
Hydrophobicity 0.263
Hydrophilicity 1.082
Buriedness 0.726
Don/acc character 1.353
SiteScore 1.168
D Score 1.022
Kd

Compound TPP
Residue . / 83
Chain N / B
Non-redundant False
Interacting RNA chains B/B
RNA environment detailled ion
RNA environment global RNA
RNA family chains B/B: riboswitch
RNA family global riboswitch
Volume 300.13 Å3
Hydrophobicity 0.764
Hydrophilicity 0.797
Buriedness 0.813
Don/acc character 1.888
SiteScore 1.009
D Score 0.837
Kd