HARIBOSS

Harnessing RIBOnucleic acid - Small molecules Structures

Compound TOC

Identifiers

  • Canonical SMILES:
    [NH3+]C[C@H]1O[C@H](O)[C@H]([NH3+])C[C@@H]1O
  • IUPAC name:
    2,6-diammonio-2,3,6-trideoxy-alpha-D-ribo-hexopyranose
  • InChi:
    InChI=1S/C6H14N2O3/c7-2-5-4(9)1-3(8)6(10)11-5/h3-6,9-10H,1-2,7-8H2/p+2/t3-,4+,5-,6+/m1/s1
  • InChiKey:
    CEGXIUROHCNLCL-MOJAZDJTSA-P
  • SMARTS:
    [#7+]-[#6]-[#6@H]1-[#8]-[#6@H](-[#8])-[#6@H](-[#7+])-[#6]-[#6@@H]-1-[#8]

Chemistry rules

Lipinski's RO5 Veber Pfizer's 3/75

External links

RNA-SM complexes

PDB code Deposition date Reference publication
1tob Dec. 12, 1996 Jiang Licong, Suri Asif K., Fiala Radovan, Patel Dinshaw J.. . Saccharide-RNA recognition in an aminoglycoside antibiotic-RNA aptamer complex Chemistry & Biology
2tob June 17, 1998 Jiang Licong, Patel Dinshaw J.. . Solution structure of the tobramycin–RNA aptamer complex Nature Structural Biology

Physicochemical filters

Descriptor Lipinski's RO5 Veber Pfizer's 3/75
Compliance
MW 164.12 g/mol
HBA 3
HBD 4
HBA + HBD
AlogP -3.69
TPSA 104.97
RB 1

Radar chart