HARIBOSS

Harnessing RIBOnucleic acid - Small molecules Structures

Compound TOA

Identifiers

  • Canonical SMILES:
    [NH3+][C@@H]1[C@@H](O)[C@@H](O)O[C@H](CO)[C@H]1O
  • IUPAC name:
    3-ammonio-3-deoxy-alpha-D-glucopyranose
  • InChi:
    InChI=1S/C6H13NO5/c7-3-4(9)2(1-8)12-6(11)5(3)10/h2-6,8-11H,1,7H2/p+1/t2-,3+,4-,5-,6+/m1/s1
  • InChiKey:
    BQCCAEOLPYCBAE-RXRWUWDJSA-O
  • SMARTS:
    [#7+]-[#6@@H]1-[#6@@H](-[#8])-[#6@@H](-[#8])-[#8]-[#6@H](-[#6]-[#8])-[#6@H]-1-[#8]

Chemistry rules

Lipinski's RO5 Veber Pfizer's 3/75

External links

RNA-SM complexes

PDB code Deposition date Reference publication
1tob Dec. 12, 1996 Jiang Licong, Suri Asif K., Fiala Radovan, Patel Dinshaw J.. . Saccharide-RNA recognition in an aminoglycoside antibiotic-RNA aptamer complex Chemistry & Biology
2tob June 17, 1998 Jiang Licong, Patel Dinshaw J.. . Solution structure of the tobramycin–RNA aptamer complex Nature Structural Biology

Physicochemical filters

Descriptor Lipinski's RO5 Veber Pfizer's 3/75
Compliance
MW 180.09 g/mol
HBA 5
HBD 5
HBA + HBD
AlogP -3.97
TPSA 117.79
RB 1

Radar chart