HARIBOSS

Harnessing RIBOnucleic acid - Small molecules Structures

Compound F2A

Identifiers

  • Canonical SMILES:
    Nc1ncnc2n(cnc12)[C@H]3C[C@H](O)[C@@H](CO[P@](O)(=O)C[P@@](O)(=O)O[P](O)(O)=O)O3
  • IUPAC name:
    2'-deoxy-5'-O-[(S)-hydroxy{[(S)-hydroxy(phosphonooxy)phosphoryl]methyl}phosphoryl]adenosine
  • InChi:
    InChI=1S/C11H18N5O11P3/c12-10-9-11(14-3-13-10)16(4-15-9)8-1-6(17)7(26-8)2-25-28(18,19)5-29(20,21)27-30(22,23)24/h3-4,6-8,17H,1-2,5H2,(H,18,19)(H,20,21)(H2,12,13,14)(H2,22,23,24)/t6-,7+,8+/m0/s1
  • InChiKey:
    XETARULVTCYJAN-XLPZGREQSA-N

Chemistry rules

Lipinski's RO5 Veber Pfizer's 3/75

External links

RNA-SM complexes

PDB code Deposition date Reference publication
4fo6 June 20, 2012 Gosavi Rajendrakumar A., Moon Andrea F., Kunkel Thomas A., Pedersen Lars C., Bebenek Katarzyna. . The catalytic cycle for ribonucleotide incorporation by human DNA Pol λ Nucleic Acids Research

Physicochemical filters

Descriptor Lipinski's RO5 Veber Pfizer's 3/75
Compliance
MW 489.02 g/mol
HBA 11
HBD 6
HBA + HBD
AlogP -0.49
TPSA 249.67
RB 8

Radar chart