HARIBOSS

Harnessing RIBOnucleic acid - Small molecules Structures

Compound DUT

Identifiers

  • Canonical SMILES:
    O[C@H]1C[C@@H](O[C@@H]1CO[P@](O)(=O)O[P@@](O)(=O)O[P](O)(O)=O)N2C=CC(=O)NC2=O
  • IUPAC name:
    2'-deoxyuridine 5'-(tetrahydrogen triphosphate)
  • InChi:
    InChI=1S/C9H15N2O14P3/c12-5-3-8(11-2-1-7(13)10-9(11)14)23-6(5)4-22-27(18,19)25-28(20,21)24-26(15,16)17/h1-2,5-6,8,12H,3-4H2,(H,18,19)(H,20,21)(H,10,13,14)(H2,15,16,17)/t5-,6+,8+/m0/s1
  • InChiKey:
    AHCYMLUZIRLXAA-SHYZEUOFSA-N

Chemistry rules

Lipinski's RO5 Veber Pfizer's 3/75

External links

RNA-SM complexes

PDB code Deposition date Reference publication
2nvx Nov. 13, 2006 Wang Dong, Bushnell David A., Westover Kenneth D., Kaplan Craig D., Kornberg Roger D.. . Structural Basis of Transcription: Role of the Trigger Loop in Substrate Specificity and Catalysis Cell

Physicochemical filters

Descriptor Lipinski's RO5 Veber Pfizer's 3/75
Compliance
MW 467.97 g/mol
HBA 10
HBD 6
HBA + HBD
AlogP -1.47
TPSA 244.14
RB 8

Radar chart