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Harnessing RIBOnucleic acid - Small molecules Structures

Compound A1C5A

Identifiers

  • Canonical SMILES:
    NC1=NC(=O)N2C=CN([C@@H]3O[C@H](CO[P](O)(=O)O[P](O)(=O)O[P](O)(O)=O)[C@@H](O)[C@H]3O)C2=N1
  • IUPAC name:
    (5S)-2-amino-8-{5-O-[(R)-hydroxy{[(R)-hydroxy(phosphonooxy)phosphoryl]oxy}phosphoryl]-beta-D-ribofuranosyl}imidazo[1,2-a][1,3,5]triazin-4(8H)-one
  • InChi:
    InChI=1S/C10H16N5O14P3/c11-8-12-9-14(1-2-15(9)10(18)13-8)7-6(17)5(16)4(27-7)3-26-31(22,23)29-32(24,25)28-30(19,20)21/h1-2,4-7,16-17H,3H2,(H,22,23)(H,24,25)(H2,11,13,18)(H2,19,20,21)/t4-,5-,6-,7-/m1/s1
  • InChiKey:
    IQZUXNWUNRGQBD-DBRKOABJSA-N
  • SMARTS:
    [#7]-[#6]1:[#7]:[#6](=[#8]):[#7]2:[#6]:[#6]:[#7](-[#6@@H]3-[#8]-[#6@H](-[#6]-[#8]-[#15](-[#8])(=[#8])-[#8]-[#15](-[#8])(=[#8])-[#8]-[#15](-[#8])(-[#8])=[#8])-[#6@@H](-[#8])-[#6@H]-3-[#8]):[#6]:2:[#7]:1

Chemistry rules

Lipinski's RO5 Veber Pfizer's 3/75

External links

RNA-SM complexes

PDB code Deposition date Reference publication
9zp4 Dec. 16, 2025 No publication

Physicochemical filters

Descriptor Lipinski's RO5 Veber Pfizer's 3/75
Compliance
MW 522.99 g/mol
HBA 13
HBD 7
HBA + HBD
AlogP -2.56
TPSA 287.72
RB 8

Radar chart