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Harnessing RIBOnucleic acid - Small molecules Structures

Illustration - complex

Complex 9zww

Legend

Pocket colors by molecule type

 RNA

 Protein

 DNA

These colors appear when a pocket is selected (the structure fades to show the pocket surface). Colors from the molecule-type palette (RNA / protein / DNA).

System information

Experimental technique X-ray
Experimental resolution 1.85
System mass 68.71 kDa
Deposition year 2026
Molecule type RNA/Protein
# RNA entities 1
Organism N/A
RCSB PDB Entry 9zww
Equivalence Class NR_all_95119.6
BGSU version: 4.61

Pockets List

Legend

Cell colors for SiteScore and D Score:

 Favourable

 Intermediate

 Unfavourable

 Not available

ScoreThresholdMeaning
SiteScore< 0.8Non-drug binding site
SiteScore0.8 – 1.0Potential drug binding site
SiteScore> 1.0Promising binding site
D Score< 0.83Undruggable
D Score0.83 – 0.98Difficult
D Score> 0.98Druggable

Tick a pocket below to highlight it in the 3D structure above.

Compound ATP
Residue . / 2002
Chain H / A
Non-redundant True
Interacting RNA chains D/D
RNA environment detailled protein, ion
RNA environment global RNA/Protein
RNA family chains D/D: synthetic construct
RNA family global synthetic construct
Volume -
Hydrophobicity -
Hydrophilicity -
Buriedness -
Don/acc character -
SiteScore -
D Score -
Kd —

Compound ATP
Residue . / 2002
Chain K / B
Non-redundant False
Interacting RNA chains E/E
RNA environment detailled protein, ion
RNA environment global RNA/Protein
RNA family chains E/E: synthetic construct
RNA family global synthetic construct
Volume -
Hydrophobicity -
Hydrophilicity -
Buriedness -
Don/acc character -
SiteScore -
D Score -
Kd —

Compound ATP
Residue . / 2002
Chain O / C
Non-redundant False
Interacting RNA chains F/F
RNA environment detailled protein, ion
RNA environment global RNA/Protein
RNA family chains F/F: synthetic construct
RNA family global synthetic construct
Volume -
Hydrophobicity -
Hydrophilicity -
Buriedness -
Don/acc character -
SiteScore -
D Score -
Kd —