HARIBOSS

Harnessing RIBOnucleic acid - Small molecules Structures

Complex 9z3d

System information

Experimental technique Electron Microscopy
Experimental resolution 2.96
System mass 98.65 kDa
Deposition year 2025
Molecule type RNA/Protein
# RNA entities 1
Organism Homo
RCSB PDB Entry 9z3d
Reference Canepa Jacob, Ruiz-Arroyo Victor M., Schlamowitz Netanya S., Nam Yunsun. . Substrate selectivity of the human RNA m5C methyltransferase NSUN2 Nature
Equivalence Class NR_all_56266.1
BGSU version: 4.49

Compound SAH
Residue . / 801
Chain C / A
Non-redundant True
Interacting RNA chains B/B
RNA environment detailled protein
RNA environment global RNA/Protein
RNA family chains B/B: tRNA
RNA family global tRNA
Volume 262.74 Å3
Hydrophobicity 0.526
Hydrophilicity 1.156
Buriedness 0.782
Don/acc character 0.974
SiteScore 1.056
D Score 1.033
Kd