Complex 9uwh
Legend
Pocket colors by molecule type
RNA
Protein
DNA
These colors appear when a pocket is selected (the structure fades to show the pocket surface). Colors from the molecule-type palette (RNA / protein / DNA).
System information
| Experimental technique | Electron Microscopy |
| Experimental resolution | 3.00 |
| System mass | 2939.79 kDa |
| Deposition year | 2025 |
| Molecule type | RNA/Protein |
| # RNA entities | 1 |
| Organism | Homo |
| RCSB PDB Entry | 9uwh |
| Reference | Wakigawa Taisei, Mito Mari, Ando Yushin, Yamashiro Haruna, Tomuro Kotaro, Tani Haruna, Tomizawa Kazuhito, Chujo Takeshi, Nagao Asuteka, Suzuki Takeo, Nureki Osamu, Wei Fan-Yan, Shichino Yuichi, Itoh Yuzuru, Suzuki Tsutomu, Iwasaki Shintaro. 2025. Monitoring the complexity and dynamics of mitochondrial translation Molecular Cell |
| Equivalence Class |
NR_all_12763.37,
NR_all_93855.32
BGSU version: 4.52 |
Pockets List
Legend
Cell colors for SiteScore and D Score:
Favourable
Intermediate
Unfavourable
Not available
| Score | Threshold | Meaning |
|---|---|---|
| SiteScore | < 0.8 | Non-drug binding site |
| SiteScore | 0.8 – 1.0 | Potential drug binding site |
| SiteScore | > 1.0 | Promising binding site |
| D Score | < 0.83 | Undruggable |
| D Score | 0.83 – 0.98 | Difficult |
| D Score | > 0.98 | Druggable |
Tick a pocket below to highlight it in the 3D structure above.
| Compound | G34 |
| Residue | . / 6456 |
| Chain | TI / A |
| Non-redundant | True |
| Interacting RNA chains | A/A |
| RNA environment detailled | protein, ion |
| RNA environment global | RNA/Protein |
| RNA family chains | A/A: rRNA |
| RNA family global | rRNA |
| Volume | 893.86 Å3 |
| Hydrophobicity | 0.405 |
| Hydrophilicity | 1.039 |
| Buriedness | 0.797 |
| Don/acc character | 2.429 |
| SiteScore | 1.217 |
| D Score | 1.080 |
| Kd | — |
| Compound | NAD |
| Residue | . / 1701 |
| Chain | BJ / AA |
| Non-redundant | True |
| Interacting RNA chains | Y/AA |
| RNA environment detailled | protein, ion |
| RNA environment global | RNA/Protein |
| RNA family chains | Y/AA: rRNA |
| RNA family global | rRNA |
| Volume | 860.24 Å3 |
| Hydrophobicity | 0.158 |
| Hydrophilicity | 1.446 |
| Buriedness | 0.800 |
| Don/acc character | 0.738 |
| SiteScore | 1.049 |
| D Score | 0.925 |
| Kd | — |