Complex 9t6h
Legend
Pocket colors by molecule type
RNA
Protein
DNA
These colors appear when a pocket is selected (the structure fades to show the pocket surface). Colors from the molecule-type palette (RNA / protein / DNA).
System information
| Experimental technique | Electron Microscopy |
| Experimental resolution | 2.40 |
| System mass | 2142.07 kDa |
| Deposition year | 2025 |
| Molecule type | RNA/Protein |
| # RNA entities | 1 |
| Organism | Francisella |
| RCSB PDB Entry | 9t6h |
| Reference | Klima Martin, Silhan Jan, Pavlik Pavla, Hercik Kamil, Boura Evzen. 2026. Structure of the hibernating Francisella tularensis ribosome and mechanistic insights into its inhibition by antibiotics Nucleic Acids Research |
| Equivalence Class |
NR_all_21436.1,
NR_all_64478.1
BGSU version: 4.52 |
Pockets List
Legend
Cell colors for SiteScore and D Score:
Favourable
Intermediate
Unfavourable
Not available
| Score | Threshold | Meaning |
|---|---|---|
| SiteScore | < 0.8 | Non-drug binding site |
| SiteScore | 0.8 – 1.0 | Potential drug binding site |
| SiteScore | > 1.0 | Promising binding site |
| D Score | < 0.83 | Undruggable |
| D Score | 0.83 – 0.98 | Difficult |
| D Score | > 0.98 | Druggable |
Tick a pocket below to highlight it in the 3D structure above.
| Compound | CLM |
| Residue | . / 3019 |
| Chain | PF / A |
| Non-redundant | True |
| Interacting RNA chains | A/A |
| RNA environment detailled | RNA-only |
| RNA environment global | RNA |
| RNA family chains | A/A: rRNA |
| RNA family global | rRNA |
| Volume | 509.36 Å3 |
| Hydrophobicity | 0.202 |
| Hydrophilicity | 1.167 |
| Buriedness | 0.702 |
| Don/acc character | 1.201 |
| SiteScore | 1.153 |
| D Score | 0.981 |
| Kd | — |
| Compound | LLL |
| Residue | . / 2901 |
| Chain | BB / A |
| Non-redundant | True |
| Interacting RNA chains | A/A |
| RNA environment detailled | RNA-only |
| RNA environment global | RNA |
| RNA family chains | A/A: rRNA |
| RNA family global | rRNA |
| Volume | 62.08 Å3 |
| Hydrophobicity | 0.185 |
| Hydrophilicity | 0.760 |
| Buriedness | 0.579 |
| Don/acc character | 3.423 |
| SiteScore | 0.634 |
| D Score | 0.411 |
| Kd | — |
| Compound | LLL |
| Residue | . / 3021 |
| Chain | RF / A |
| Non-redundant | True |
| Interacting RNA chains | A/A |
| RNA environment detailled | RNA-only |
| RNA environment global | RNA |
| RNA family chains | A/A: rRNA |
| RNA family global | rRNA |
| Volume | 238.73 Å3 |
| Hydrophobicity | 0.084 |
| Hydrophilicity | 1.363 |
| Buriedness | 0.804 |
| Don/acc character | 1.682 |
| SiteScore | 0.902 |
| D Score | 0.570 |
| Kd | — |
| Compound | LLL |
| Residue | . / 3022 |
| Chain | SF / A |
| Non-redundant | True |
| Interacting RNA chains | A/A |
| RNA environment detailled | RNA-only |
| RNA environment global | RNA |
| RNA family chains | A/A: rRNA |
| RNA family global | rRNA |
| Volume | - |
| Hydrophobicity | - |
| Hydrophilicity | - |
| Buriedness | - |
| Don/acc character | - |
| SiteScore | - |
| D Score | - |
| Kd | — |
| Compound | LLL |
| Residue | . / 3023 |
| Chain | TF / A |
| Non-redundant | True |
| Interacting RNA chains | A/A |
| RNA environment detailled | RNA-only |
| RNA environment global | RNA |
| RNA family chains | A/A: rRNA |
| RNA family global | rRNA |
| Volume | 197.91 Å3 |
| Hydrophobicity | 0.009 |
| Hydrophilicity | 0.766 |
| Buriedness | 0.520 |
| Don/acc character | 2.426 |
| SiteScore | 1.083 |
| D Score | 1.002 |
| Kd | — |
| Compound | LLL |
| Residue | . / 3024 |
| Chain | UF / A |
| Non-redundant | True |
| Interacting RNA chains | A/A |
| RNA environment detailled | protein |
| RNA environment global | RNA/Protein |
| RNA family chains | A/A: rRNA |
| RNA family global | rRNA |
| Volume | 251.76 Å3 |
| Hydrophobicity | 0.085 |
| Hydrophilicity | 1.378 |
| Buriedness | 0.768 |
| Don/acc character | 2.283 |
| SiteScore | 0.722 |
| D Score | 0.509 |
| Kd | — |
| Compound | LLL |
| Residue | . / 1615 |
| Chain | OG / a |
| Non-redundant | True |
| Interacting RNA chains | FA/a |
| RNA environment detailled | RNA-only |
| RNA environment global | RNA |
| RNA family chains | FA/a: rRNA |
| RNA family global | rRNA |
| Volume | 108.73 Å3 |
| Hydrophobicity | 0.444 |
| Hydrophilicity | 0.796 |
| Buriedness | 0.589 |
| Don/acc character | 2.828 |
| SiteScore | 0.758 |
| D Score | 0.564 |
| Kd | — |
| Compound | LLL |
| Residue | . / 1616 |
| Chain | PG / a |
| Non-redundant | True |
| Interacting RNA chains | FA/a |
| RNA environment detailled | RNA-only |
| RNA environment global | RNA |
| RNA family chains | FA/a: rRNA |
| RNA family global | rRNA |
| Volume | - |
| Hydrophobicity | - |
| Hydrophilicity | - |
| Buriedness | - |
| Don/acc character | - |
| SiteScore | - |
| D Score | - |
| Kd | — |
| Compound | LLL |
| Residue | . / 1617 |
| Chain | QG / a |
| Non-redundant | True |
| Interacting RNA chains | FA/a |
| RNA environment detailled | RNA-only |
| RNA environment global | RNA |
| RNA family chains | FA/a: rRNA |
| RNA family global | rRNA |
| Volume | 767.29 Å3 |
| Hydrophobicity | 0.180 |
| Hydrophilicity | 1.049 |
| Buriedness | 0.751 |
| Don/acc character | 2.316 |
| SiteScore | 1.181 |
| D Score | 1.044 |
| Kd | — |
| Compound | LLL |
| Residue | . / 1618 |
| Chain | RG / a |
| Non-redundant | True |
| Interacting RNA chains | FA/a |
| RNA environment detailled | protein |
| RNA environment global | RNA/Protein |
| RNA family chains | FA/a: rRNA |
| RNA family global | rRNA |
| Volume | 228.10 Å3 |
| Hydrophobicity | 0.442 |
| Hydrophilicity | 1.198 |
| Buriedness | 0.791 |
| Don/acc character | 1.642 |
| SiteScore | 0.887 |
| D Score | 0.607 |
| Kd | — |