HARIBOSS

Harnessing RIBOnucleic acid - Small molecules Structures

Complex 9sdf

System information

Experimental technique X-ray
Experimental resolution 1.90
System mass 79.33 kDa
Deposition year 2025
Molecule type RNA/Protein
# RNA entities 1
Organism Thermus
RCSB PDB Entry 9sdf
Reference Yaremchuk Anna, Kriklivyi Ivan, Tukalo Michael, Cusack Stephen. . Class I tyrosyl‐tRNA synthetase has a class II mode of cognate tRNA recognition The EMBO Journal
Equivalence Class NR_all_66106.2
BGSU version: 4.48

Compound 1PE
Residue . / 106
Chain R / T
Non-redundant True
Interacting RNA chains B/T
RNA environment detailled protein
RNA environment global RNA/Protein
RNA family chains B/T: tRNA
RNA family global tRNA
Volume 102.90 Å3
Hydrophobicity 1.092
Hydrophilicity 0.813
Buriedness 0.636
Don/acc character 1.139
SiteScore 0.842
D Score 0.851
Kd