Complex 9ruc
Legend
Pocket colors by molecule type
RNA
Protein
DNA
These colors appear when a pocket is selected (the structure fades to show the pocket surface). Colors from the molecule-type palette (RNA / protein / DNA).
System information
| Experimental technique | Electron Microscopy |
| Experimental resolution | 2.50 |
| System mass | 3815.60 kDa |
| Deposition year | 2025 |
| Molecule type | RNA/Protein |
| # RNA entities | 1 |
| Organism | Homo |
| RCSB PDB Entry | 9ruc |
| Reference | Fraticelli Davide, Hiregange Disha Gajanan, Weiss Benjamin, Ogran Ariel, Havkin-Solomon Tal, Roman Irene Martinez, Bashan Anat, Yonath Ada, Dikstein Rivka. 2026. Structural and molecular basis of specialized translation mediated by the ribosome mRNA-binding channel Nature Communications |
| Equivalence Class |
NR_all_46995.72
BGSU version: 4.52 |
Pockets List
Legend
Cell colors for SiteScore and D Score:
Favourable
Intermediate
Unfavourable
Not available
| Score | Threshold | Meaning |
|---|---|---|
| SiteScore | < 0.8 | Non-drug binding site |
| SiteScore | 0.8 – 1.0 | Potential drug binding site |
| SiteScore | > 1.0 | Promising binding site |
| D Score | < 0.83 | Undruggable |
| D Score | 0.83 – 0.98 | Difficult |
| D Score | > 0.98 | Druggable |
Tick a pocket below to highlight it in the 3D structure above.
| Compound | HYG |
| Residue | . / 1901 |
| Chain | JD / S2 |
| Non-redundant | False |
| Interacting RNA chains | XA/mR, UB/S2 |
| RNA environment detailled | RNA-only |
| RNA environment global | RNA |
| RNA family chains | UB/S2: rRNA, XA/mR: mRNA |
| RNA family global | multiple |
| Volume | - |
| Hydrophobicity | - |
| Hydrophilicity | - |
| Buriedness | - |
| Don/acc character | - |
| SiteScore | - |
| D Score | - |
| Kd | — |