Complex 9rtv
System information
| Experimental technique | Electron Microscopy |
| Experimental resolution | 3.60 |
| System mass | 2322.01 kDa |
| Deposition year | 2025 |
| Molecule type | RNA/Protein |
| # RNA entities | 1 |
| Organism | Escherichia |
| RCSB PDB Entry | 9rtv |
| Reference | Ghosh Dastidar Nilanjan, Freyer Nicola S., Petrychenko Valentyn, de A. P. Schwarzer Ana C., Peng Bee-Zen, Samatova Ekaterina, Kothe Christina, Schmidt Marlen, Peske Frank, Politi Antonio Z., Urlaub Henning, Fischer Niels, Rodnina Marina V., Wohlgemuth Ingo. . Selective silencing of antibiotic-tethered ribosomes as a resistance mechanism against aminoglycosides Nature Communications |
| Compound | AM2 |
| Residue | . / 1605 |
| Chain | HM / a |
| Non-redundant | True |
| Interacting RNA chains | HA/a |
| Volume | 778.27 Å3 |
| Hydrophobicity | 0.242 |
| Hydrophilicity | 1.151 |
| Buriedness | 0.745 |
| Don/acc character | 2.355 |
| SiteScore | 1.182 |
| D Score | 1.012 |
| Compound | AM2 |
| Residue | . / 1614 |
| Chain | QM / a |
| Non-redundant | True |
| Interacting RNA chains | HA/a |
| Volume | 134.11 Å3 |
| Hydrophobicity | 1.026 |
| Hydrophilicity | 0.981 |
| Buriedness | 0.939 |
| Don/acc character | 1.195 |
| SiteScore | 1.011 |
| D Score | 0.784 |
| Compound | AM2 |
| Residue | . / 1663 |
| Chain | NO / a |
| Non-redundant | True |
| Interacting RNA chains | HA/a |
| Volume | 599.22 Å3 |
| Hydrophobicity | 0.261 |
| Hydrophilicity | 1.071 |
| Buriedness | 0.721 |
| Don/acc character | 3.382 |
| SiteScore | 1.015 |
| D Score | 1.023 |
| Compound | GDP |
| Residue | . / 801 |
| Chain | SP / x |
| Non-redundant | True |
| Interacting RNA chains | H/A |
| Volume | 613.28 Å3 |
| Hydrophobicity | 0.431 |
| Hydrophilicity | 1.752 |
| Buriedness | 0.824 |
| Don/acc character | 0.739 |
| SiteScore | 1.084 |
| D Score | 0.863 |