Complex 9rtu
System information
| Experimental technique | Electron Microscopy |
| Experimental resolution | 3.00 |
| System mass | 2322.01 kDa |
| Deposition year | 2025 |
| Molecule type | RNA/Protein |
| # RNA entities | 1 |
| Organism | Escherichia |
| RCSB PDB Entry | 9rtu |
| Reference | Ghosh Dastidar Nilanjan, Freyer Nicola S., Petrychenko Valentyn, de A. P. Schwarzer Ana C., Peng Bee-Zen, Samatova Ekaterina, Kothe Christina, Schmidt Marlen, Peske Frank, Politi Antonio Z., Urlaub Henning, Fischer Niels, Rodnina Marina V., Wohlgemuth Ingo. . Selective silencing of antibiotic-tethered ribosomes as a resistance mechanism against aminoglycosides Nature Communications |
| Compound | AM2 |
| Residue | . / 1618 |
| Chain | TM / a |
| Non-redundant | True |
| Interacting RNA chains | HA/a |
| Volume | 285.38 Å3 |
| Hydrophobicity | 0.180 |
| Hydrophilicity | 1.278 |
| Buriedness | 0.768 |
| Don/acc character | 1.809 |
| SiteScore | 0.792 |
| D Score | 0.695 |
| Compound | AM2 |
| Residue | . / 1630 |
| Chain | FN / a |
| Non-redundant | True |
| Interacting RNA chains | HA/a |
| Volume | 298.07 Å3 |
| Hydrophobicity | 0.000 |
| Hydrophilicity | 1.213 |
| Buriedness | 0.729 |
| Don/acc character | 1.262 |
| SiteScore | 0.633 |
| D Score | 0.636 |
| Compound | AM2 |
| Residue | . / 1633 |
| Chain | IN / a |
| Non-redundant | True |
| Interacting RNA chains | HA/a, H/A |
| Volume | 561.49 Å3 |
| Hydrophobicity | 0.343 |
| Hydrophilicity | 1.136 |
| Buriedness | 0.733 |
| Don/acc character | 2.050 |
| SiteScore | 1.024 |
| D Score | 1.009 |
| Compound | GDP |
| Residue | . / 804 |
| Chain | TP / x |
| Non-redundant | True |
| Interacting RNA chains | H/A |
| Volume | 452.42 Å3 |
| Hydrophobicity | 0.159 |
| Hydrophilicity | 1.791 |
| Buriedness | 0.814 |
| Don/acc character | 0.831 |
| SiteScore | 1.077 |
| D Score | 0.844 |