HARIBOSS

Harnessing RIBOnucleic acid - Small molecules Structures

Complex 9qqb

System information

Experimental technique Electron Microscopy
Experimental resolution 3.43
System mass 4090.61 kDa
Deposition year 2025
Molecule type RNA/Protein
# RNA entities 1
Organism Oryctolagus
RCSB PDB Entry 9qqb
Reference Gamerdinger Martin, Echeverria Blanca, Lentzsch Alfred M., Burg Nicolas, Fan Ziyi, Jaskolowski Mateusz, Scaiola Alain, Piening Selina, Shan Shu-ou, Ban Nenad, Deuerling Elke. . Mechanism of cotranslational protein N-myristoylation in human cells Molecular Cell

Compound SPM
Residue . / 4911
Chain VC / B5
Non-redundant True
Interacting RNA chains A/B5
Volume 242.84 Å3
Hydrophobicity 0.011
Hydrophilicity 1.442
Buriedness 0.705
Don/acc character 1.718
SiteScore 0.815
D Score 0.650

Compound SPM
Residue . / 4914
Chain YC / B5
Non-redundant True
Interacting RNA chains A/B5
Volume -
Hydrophobicity -
Hydrophilicity -
Buriedness -
Don/acc character -
SiteScore -
D Score -

Compound SPM
Residue . / 1909
Chain VU / A2
Non-redundant True
Interacting RNA chains BB/A2
Volume 596.82 Å3
Hydrophobicity 0.364
Hydrophilicity 1.032
Buriedness 0.797
Don/acc character 2.792
SiteScore 1.218
D Score 1.082