HARIBOSS

Harnessing RIBOnucleic acid - Small molecules Structures

Complex 9pvx

System information

Experimental technique X-ray
Experimental resolution 3.39
System mass 488.06 kDa
Deposition year 2025
Molecule type RNA/DNA/Protein
# RNA entities 1
Organism N/A
RCSB PDB Entry 9pvx
Reference Hou Peini, Lee Chanjoo, Chong Jenny, Oh Juntaek, Wang Dong. . Structural basis of transcription-coupled RNA damage by incorporation of oxidized ribonucleotides Proceedings of the National Academy of Sciences

Compound 8GT
Residue . / 1301
Chain Q / B
Non-redundant True
Interacting RNA chains A/R
RNA environment detailled protein, ion
RNA environment global RNA/Protein
RNA family chains A/R: synthetic construct
RNA family global synthetic construct
Volume 281.95 Å3
Hydrophobicity 0.114
Hydrophilicity 1.355
Buriedness 0.749
Don/acc character 0.723
SiteScore 0.892
D Score 0.765
Kd