Complex 9pvv
Legend
Pocket colors by molecule type
RNA
Protein
DNA
These colors appear when a pocket is selected (the structure fades to show the pocket surface). Colors from the molecule-type palette (RNA / protein / DNA).
System information
| Experimental technique | X-ray |
| Experimental resolution | 3.48 |
| System mass | 488.04 kDa |
| Deposition year | 2025 |
| Molecule type | RNA/DNA/Protein |
| # RNA entities | 1 |
| Organism | N/A |
| RCSB PDB Entry | 9pvv |
| Reference | Hou Peini, Lee Chanjoo, Chong Jenny, Oh Juntaek, Wang Dong. 2026. Structural basis of transcription-coupled RNA damage by incorporation of oxidized ribonucleotides Proceedings of the National Academy of Sciences |
Pockets List
Legend
Cell colors for SiteScore and D Score:
Favourable
Intermediate
Unfavourable
Not available
| Score | Threshold | Meaning |
|---|---|---|
| SiteScore | < 0.8 | Non-drug binding site |
| SiteScore | 0.8 – 1.0 | Potential drug binding site |
| SiteScore | > 1.0 | Promising binding site |
| D Score | < 0.83 | Undruggable |
| D Score | 0.83 – 0.98 | Difficult |
| D Score | > 0.98 | Druggable |
Tick a pocket below to highlight it in the 3D structure above.
| Compound | 8GT |
| Residue | . / 101 |
| Chain | N / T |
| Non-redundant | True |
| Interacting RNA chains | A/R |
| RNA environment detailled | DNA, protein, ion |
| RNA environment global | RNA/DNA/Protein |
| RNA family chains | A/R: rRNA |
| RNA family global | rRNA |
| Volume | 765.23 Å3 |
| Hydrophobicity | 0.647 |
| Hydrophilicity | 1.318 |
| Buriedness | 0.845 |
| Don/acc character | 1.126 |
| SiteScore | 1.098 |
| D Score | 1.017 |
| Kd | — |