HARIBOSS

Harnessing RIBOnucleic acid - Small molecules Structures

Complex 9pvv

System information

Experimental technique X-ray
Experimental resolution 3.48
System mass 488.04 kDa
Deposition year 2025
Molecule type RNA/DNA/Protein
# RNA entities 1
Organism N/A
RCSB PDB Entry 9pvv
Reference Hou Peini, Lee Chanjoo, Chong Jenny, Oh Juntaek, Wang Dong. . Structural basis of transcription-coupled RNA damage by incorporation of oxidized ribonucleotides Proceedings of the National Academy of Sciences

Compound 8GT
Residue . / 101
Chain N / T
Non-redundant True
Interacting RNA chains A/R
RNA environment detailled DNA, protein, ion
RNA environment global RNA/DNA/Protein
RNA family chains A/R: rRNA
RNA family global rRNA
Volume 765.23 Å3
Hydrophobicity 0.647
Hydrophilicity 1.318
Buriedness 0.845
Don/acc character 1.126
SiteScore 1.098
D Score 1.017
Kd