HARIBOSS

Harnessing RIBOnucleic acid - Small molecules Structures

Complex 9psi

System information

Experimental technique Electron Microscopy
Experimental resolution 3.12
System mass 3107.24 kDa
Deposition year 2025
Molecule type RNA/Protein
# RNA entities 1
Organism Homo
RCSB PDB Entry 9psi
Reference Wang Shuhui, Brischigliaro Michele, Zhang Yuekang, Wu Chunxiang, Zheng Wei, Barrientos Antoni, Xiong Yong. . Structural basis of TACO1-mediated efficient mitochondrial translation Nature Communications

Compound NAD
Residue . / 1701
Chain AK / AA
Non-redundant True
Interacting RNA chains CC/AA
Volume 711.38 Å3
Hydrophobicity 0.257
Hydrophilicity 1.320
Buriedness 0.812
Don/acc character 0.881
SiteScore 1.027
D Score 0.934

Compound SPM
Residue . / 1702
Chain BK / AA
Non-redundant True
Interacting RNA chains CC/AA
Volume 666.79 Å3
Hydrophobicity 0.298
Hydrophilicity 1.077
Buriedness 0.802
Don/acc character 4.368
SiteScore 1.220
D Score 1.070

Compound SPM
Residue . / 1778
Chain ZM / AA
Non-redundant True
Interacting RNA chains CC/AA
Volume 204.09 Å3
Hydrophobicity 0.130
Hydrophilicity 1.215
Buriedness 0.786
Don/acc character 2.841
SiteScore 0.754
D Score 0.555