Complex 9psi
Legend
Pocket colors by molecule type
RNA
Protein
DNA
These colors appear when a pocket is selected (the structure fades to show the pocket surface). Colors from the molecule-type palette (RNA / protein / DNA).
System information
| Experimental technique | Electron Microscopy |
| Experimental resolution | 3.12 |
| System mass | 3107.24 kDa |
| Deposition year | 2025 |
| Molecule type | RNA/Protein |
| # RNA entities | 1 |
| Organism | Homo |
| RCSB PDB Entry | 9psi |
| Reference | Wang Shuhui, Brischigliaro Michele, Zhang Yuekang, Wu Chunxiang, Zheng Wei, Barrientos Antoni, Xiong Yong. 2026. Structural basis of TACO1-mediated efficient mitochondrial translation Nature Communications |
| Equivalence Class |
NR_all_93855.32
BGSU version: 4.52 |
Pockets List
Legend
Cell colors for SiteScore and D Score:
Favourable
Intermediate
Unfavourable
Not available
| Score | Threshold | Meaning |
|---|---|---|
| SiteScore | < 0.8 | Non-drug binding site |
| SiteScore | 0.8 – 1.0 | Potential drug binding site |
| SiteScore | > 1.0 | Promising binding site |
| D Score | < 0.83 | Undruggable |
| D Score | 0.83 – 0.98 | Difficult |
| D Score | > 0.98 | Druggable |
Tick a pocket below to highlight it in the 3D structure above.
| Compound | NAD |
| Residue | . / 1701 |
| Chain | AK / AA |
| Non-redundant | True |
| Interacting RNA chains | CC/AA |
| RNA environment detailled | protein, ion |
| RNA environment global | RNA/Protein |
| RNA family chains | CC/AA: rRNA |
| RNA family global | rRNA |
| Volume | 711.38 Å3 |
| Hydrophobicity | 0.257 |
| Hydrophilicity | 1.320 |
| Buriedness | 0.812 |
| Don/acc character | 0.881 |
| SiteScore | 1.027 |
| D Score | 0.934 |
| Kd | — |
| Compound | SPM |
| Residue | . / 1702 |
| Chain | BK / AA |
| Non-redundant | True |
| Interacting RNA chains | CC/AA |
| RNA environment detailled | ion |
| RNA environment global | RNA |
| RNA family chains | CC/AA: rRNA |
| RNA family global | rRNA |
| Volume | 666.79 Å3 |
| Hydrophobicity | 0.298 |
| Hydrophilicity | 1.077 |
| Buriedness | 0.802 |
| Don/acc character | 4.368 |
| SiteScore | 1.220 |
| D Score | 1.070 |
| Kd | — |
| Compound | SPM |
| Residue | . / 1778 |
| Chain | ZM / AA |
| Non-redundant | True |
| Interacting RNA chains | CC/AA |
| RNA environment detailled | RNA-only |
| RNA environment global | RNA |
| RNA family chains | CC/AA: rRNA |
| RNA family global | rRNA |
| Volume | 204.09 Å3 |
| Hydrophobicity | 0.130 |
| Hydrophilicity | 1.215 |
| Buriedness | 0.786 |
| Don/acc character | 2.841 |
| SiteScore | 0.754 |
| D Score | 0.555 |
| Kd | — |