HARIBOSS

Harnessing RIBOnucleic acid - Small molecules Structures

Complex 9prx

System information

Experimental technique Electron Microscopy
Experimental resolution 3.23
System mass 3045.93 kDa
Deposition year 2025
Molecule type RNA/Protein
# RNA entities 1
Organism Homo
RCSB PDB Entry 9prx
Reference Wang Shuhui, Brischigliaro Michele, Zhang Yuekang, Wu Chunxiang, Zheng Wei, Barrientos Antoni, Xiong Yong. . Structural basis of TACO1-mediated efficient mitochondrial translation Nature Communications

Compound NAD
Residue . / 1701
Chain ZJ / AA
Non-redundant True
Interacting RNA chains CC/AA
Volume 734.36 Å3
Hydrophobicity 0.204
Hydrophilicity 1.557
Buriedness 0.817
Don/acc character 0.589
SiteScore 1.080
D Score 0.923

Compound SPM
Residue . / 1702
Chain AK / AA
Non-redundant True
Interacting RNA chains CC/AA
Volume 741.57 Å3
Hydrophobicity 0.212
Hydrophilicity 1.128
Buriedness 0.806
Don/acc character 3.499
SiteScore 1.222
D Score 1.056

Compound SPM
Residue . / 1779
Chain ZM / AA
Non-redundant True
Interacting RNA chains CC/AA
Volume 768.32 Å3
Hydrophobicity 0.264
Hydrophilicity 1.191
Buriedness 0.821
Don/acc character 3.373
SiteScore 1.233
D Score 1.044