Complex 9prd
System information
| Experimental technique | Electron Microscopy |
| Experimental resolution | 3.31 |
| System mass | 3021.66 kDa |
| Deposition year | 2025 |
| Molecule type | RNA/Protein |
| # RNA entities | 1 |
| Organism | Homo |
| RCSB PDB Entry | 9prd |
| Reference | Wang Shuhui, Brischigliaro Michele, Zhang Yuekang, Wu Chunxiang, Zheng Wei, Barrientos Antoni, Xiong Yong. . Structural basis of TACO1-mediated efficient mitochondrial translation Nature Communications |
| Equivalence Class |
NR_all_93855.31
BGSU version: 4.49 |
| Compound | NAD |
| Residue | . / 1701 |
| Chain | VJ / AA |
| Non-redundant | True |
| Interacting RNA chains | BC/AA |
| RNA environment detailled | protein, ion |
| RNA environment global | RNA/Protein |
| RNA family chains | BC/AA: rRNA |
| RNA family global | rRNA |
| Volume | 602.65 Å3 |
| Hydrophobicity | 0.169 |
| Hydrophilicity | 1.294 |
| Buriedness | 0.645 |
| Don/acc character | 1.027 |
| SiteScore | 0.965 |
| D Score | 0.905 |
| Kd | — |
| Compound | SPM |
| Residue | . / 1702 |
| Chain | WJ / AA |
| Non-redundant | True |
| Interacting RNA chains | BC/AA |
| RNA environment detailled | ion |
| RNA environment global | RNA |
| RNA family chains | BC/AA: rRNA |
| RNA family global | rRNA |
| Volume | 899.69 Å3 |
| Hydrophobicity | 0.156 |
| Hydrophilicity | 1.150 |
| Buriedness | 0.810 |
| Don/acc character | 3.484 |
| SiteScore | 1.225 |
| D Score | 1.051 |
| Kd | — |
| Compound | SPM |
| Residue | . / 1780 |
| Chain | WM / AA |
| Non-redundant | True |
| Interacting RNA chains | BC/AA |
| RNA environment detailled | RNA-only |
| RNA environment global | RNA |
| RNA family chains | BC/AA: rRNA |
| RNA family global | rRNA |
| Volume | - |
| Hydrophobicity | - |
| Hydrophilicity | - |
| Buriedness | - |
| Don/acc character | - |
| SiteScore | - |
| D Score | - |
| Kd | — |