HARIBOSS

Harnessing RIBOnucleic acid - Small molecules Structures

Complex 9prd

System information

Experimental technique Electron Microscopy
Experimental resolution 3.31
System mass 3021.66 kDa
Deposition year 2025
Molecule type RNA/Protein
# RNA entities 1
Organism Homo
RCSB PDB Entry 9prd
Reference Wang Shuhui, Brischigliaro Michele, Zhang Yuekang, Wu Chunxiang, Zheng Wei, Barrientos Antoni, Xiong Yong. . Structural basis of TACO1-mediated efficient mitochondrial translation Nature Communications

Compound NAD
Residue . / 1701
Chain VJ / AA
Non-redundant True
Interacting RNA chains BC/AA
Volume 602.65 Å3
Hydrophobicity 0.169
Hydrophilicity 1.294
Buriedness 0.645
Don/acc character 1.027
SiteScore 0.965
D Score 0.905

Compound SPM
Residue . / 1702
Chain WJ / AA
Non-redundant True
Interacting RNA chains BC/AA
Volume 899.69 Å3
Hydrophobicity 0.156
Hydrophilicity 1.150
Buriedness 0.810
Don/acc character 3.484
SiteScore 1.225
D Score 1.051

Compound SPM
Residue . / 1780
Chain WM / AA
Non-redundant True
Interacting RNA chains BC/AA
Volume -
Hydrophobicity -
Hydrophilicity -
Buriedness -
Don/acc character -
SiteScore -
D Score -