Complex 9pj7
System information
| Experimental technique | Electron Microscopy |
| Experimental resolution | 2.40 |
| System mass | 2282.41 kDa |
| Deposition year | 2025 |
| Molecule type | RNA/Protein |
| # RNA entities | 1 |
| Organism | Cutibacterium |
| RCSB PDB Entry | 9pj7 |
| Reference | Devarkar Swapnil C., Lomakin Ivan B., Wang Jimin, Grada Ayman, Bunick Christopher G.. . Dual site targeting of the bacterial 70S ribosome by tetracyclines Nature Communications |
| Equivalence Class |
NR_all_00194.1,
NR_all_86966.1
BGSU version: 4.49 |
| Compound | DXT |
| Residue | . / 1615 |
| Chain | TB / A |
| Non-redundant | True |
| Interacting RNA chains | CA/Y, F/A |
| RNA environment detailled | ion |
| RNA environment global | RNA |
| RNA family chains | F/A: rRNA, CA/Y: mRNA |
| RNA family global | multiple |
| Volume | 175.62 Å3 |
| Hydrophobicity | 0.397 |
| Hydrophilicity | 1.026 |
| Buriedness | 0.752 |
| Don/acc character | 2.358 |
| SiteScore | 0.948 |
| D Score | 0.747 |
| Kd | — |
| Compound | DXT |
| Residue | . / 3123 |
| Chain | CE / a |
| Non-redundant | True |
| Interacting RNA chains | DA/a |
| RNA environment detailled | ion |
| RNA environment global | RNA |
| RNA family chains | DA/a: rRNA |
| RNA family global | rRNA |
| Volume | 756.66 Å3 |
| Hydrophobicity | 0.276 |
| Hydrophilicity | 0.884 |
| Buriedness | 0.712 |
| Don/acc character | 3.465 |
| SiteScore | 1.189 |
| D Score | 1.079 |
| Kd | — |
| Compound | DXT |
| Residue | . / 3130 |
| Chain | JE / a |
| Non-redundant | True |
| Interacting RNA chains | DA/a |
| RNA environment detailled | ion, other |
| RNA environment global | RNA/Other |
| RNA family chains | DA/a: rRNA |
| RNA family global | rRNA |
| Volume | 458.25 Å3 |
| Hydrophobicity | 0.857 |
| Hydrophilicity | 0.755 |
| Buriedness | 0.768 |
| Don/acc character | 3.590 |
| SiteScore | 1.105 |
| D Score | 0.967 |
| Kd | — |
| Compound | DXT |
| Residue | . / 3138 |
| Chain | RE / a |
| Non-redundant | True |
| Interacting RNA chains | DA/a |
| RNA environment detailled | ion, other |
| RNA environment global | RNA/Other |
| RNA family chains | DA/a: rRNA |
| RNA family global | rRNA |
| Volume | 387.25 Å3 |
| Hydrophobicity | 0.546 |
| Hydrophilicity | 1.129 |
| Buriedness | 0.787 |
| Don/acc character | 1.719 |
| SiteScore | 1.067 |
| D Score | 0.862 |
| Kd | — |
| Compound | DXT |
| Residue | . / 3146 |
| Chain | ZE / a |
| Non-redundant | True |
| Interacting RNA chains | DA/a |
| RNA environment detailled | ion, other |
| RNA environment global | RNA/Other |
| RNA family chains | DA/a: rRNA |
| RNA family global | rRNA |
| Volume | 610.54 Å3 |
| Hydrophobicity | 0.786 |
| Hydrophilicity | 0.847 |
| Buriedness | 0.766 |
| Don/acc character | 2.511 |
| SiteScore | 1.233 |
| D Score | 1.123 |
| Kd | — |
| Compound | DXT |
| Residue | . / 201 |
| Chain | MM / r |
| Non-redundant | True |
| Interacting RNA chains | DA/a |
| RNA environment detailled | protein, ion, other |
| RNA environment global | RNA/Other |
| RNA family chains | DA/a: rRNA |
| RNA family global | rRNA |
| Volume | 661.65 Å3 |
| Hydrophobicity | 0.288 |
| Hydrophilicity | 1.301 |
| Buriedness | 0.773 |
| Don/acc character | 1.178 |
| SiteScore | 1.200 |
| D Score | 0.980 |
| Kd | — |
| Compound | DXT |
| Residue | . / 201 |
| Chain | NM / s |
| Non-redundant | True |
| Interacting RNA chains | DA/a |
| RNA environment detailled | protein, ion, other |
| RNA environment global | RNA/Other |
| RNA family chains | DA/a: rRNA |
| RNA family global | rRNA |
| Volume | 136.86 Å3 |
| Hydrophobicity | 0.013 |
| Hydrophilicity | 1.112 |
| Buriedness | 0.761 |
| Don/acc character | 2.018 |
| SiteScore | 0.770 |
| D Score | 0.493 |
| Kd | — |