HARIBOSS

Harnessing RIBOnucleic acid - Small molecules Structures

Complex 9pgm

System information

Experimental technique Electron Microscopy
Experimental resolution 3.18
System mass 3083.92 kDa
Deposition year 2025
Molecule type RNA/Protein
# RNA entities 1
Organism Homo
RCSB PDB Entry 9pgm
Reference Wang Shuhui, Brischigliaro Michele, Zhang Yuekang, Wu Chunxiang, Zheng Wei, Barrientos Antoni, Xiong Yong. . Structural basis of TACO1-mediated efficient mitochondrial translation Nature Communications

Compound NAD
Residue . / 1701
Chain YJ / AA
Non-redundant True
Interacting RNA chains CC/AA
Volume 923.01 Å3
Hydrophobicity 0.073
Hydrophilicity 1.621
Buriedness 0.820
Don/acc character 0.626
SiteScore 1.082
D Score 0.904

Compound SPM
Residue . / 1702
Chain ZJ / AA
Non-redundant True
Interacting RNA chains CC/AA
Volume 775.52 Å3
Hydrophobicity 0.217
Hydrophilicity 1.115
Buriedness 0.807
Don/acc character 3.276
SiteScore 1.223
D Score 1.061

Compound SPM
Residue . / 1780
Chain ZM / AA
Non-redundant True
Interacting RNA chains CC/AA
Volume 734.02 Å3
Hydrophobicity 0.242
Hydrophilicity 1.093
Buriedness 0.769
Don/acc character 4.375
SiteScore 1.197
D Score 1.045