HARIBOSS

Harnessing RIBOnucleic acid - Small molecules Structures

Complex 9pgl

System information

Experimental technique Electron Microscopy
Experimental resolution 2.90
System mass 3100.92 kDa
Deposition year 2025
Molecule type RNA/Protein
# RNA entities 1
Organism Homo
RCSB PDB Entry 9pgl
Reference Wang Shuhui, Brischigliaro Michele, Zhang Yuekang, Wu Chunxiang, Zheng Wei, Barrientos Antoni, Xiong Yong. . Structural basis of TACO1-mediated efficient mitochondrial translation Nature Communications

Compound NAD
Residue . / 1701
Chain YJ / AA
Non-redundant True
Interacting RNA chains DC/AA
Volume 893.86 Å3
Hydrophobicity 0.134
Hydrophilicity 1.504
Buriedness 0.836
Don/acc character 0.695
SiteScore 1.092
D Score 0.951

Compound SPM
Residue . / 1702
Chain ZJ / AA
Non-redundant True
Interacting RNA chains DC/AA
Volume 870.88 Å3
Hydrophobicity 0.121
Hydrophilicity 1.212
Buriedness 0.807
Don/acc character 2.752
SiteScore 1.223
D Score 1.029

Compound SPM
Residue . / 1780
Chain ZM / AA
Non-redundant True
Interacting RNA chains DC/AA
Volume 696.63 Å3
Hydrophobicity 0.158
Hydrophilicity 1.197
Buriedness 0.789
Don/acc character 2.854
SiteScore 1.211
D Score 1.023