HARIBOSS

Harnessing RIBOnucleic acid - Small molecules Structures

Complex 9pgi

System information

Experimental technique Electron Microscopy
Experimental resolution 3.02
System mass 3162.09 kDa
Deposition year 2025
Molecule type RNA/Protein
# RNA entities 1
Organism Homo
RCSB PDB Entry 9pgi
Reference Wang Shuhui, Brischigliaro Michele, Zhang Yuekang, Wu Chunxiang, Zheng Wei, Barrientos Antoni, Xiong Yong. . Structural basis of TACO1-mediated efficient mitochondrial translation Nature Communications

Compound NAD
Residue . / 1701
Chain ZJ / AA
Non-redundant True
Interacting RNA chains EC/AA
Volume 884.25 Å3
Hydrophobicity 0.145
Hydrophilicity 1.537
Buriedness 0.820
Don/acc character 0.705
SiteScore 1.082
D Score 0.931

Compound SPM
Residue . / 1702
Chain AK / AA
Non-redundant True
Interacting RNA chains EC/AA
Volume 787.53 Å3
Hydrophobicity 0.160
Hydrophilicity 1.152
Buriedness 0.805
Don/acc character 3.324
SiteScore 1.221
D Score 1.047

Compound SPM
Residue . / 1781
Chain BN / AA
Non-redundant True
Interacting RNA chains EC/AA
Volume 237.36 Å3
Hydrophobicity 0.254
Hydrophilicity 0.998
Buriedness 0.725
Don/acc character 4.371
SiteScore 0.842
D Score 0.598