Complex 9pgi
System information
| Experimental technique | Electron Microscopy |
| Experimental resolution | 3.02 |
| System mass | 3162.09 kDa |
| Deposition year | 2025 |
| Molecule type | RNA/Protein |
| # RNA entities | 1 |
| Organism | Homo |
| RCSB PDB Entry | 9pgi |
| Reference | Wang Shuhui, Brischigliaro Michele, Zhang Yuekang, Wu Chunxiang, Zheng Wei, Barrientos Antoni, Xiong Yong. . Structural basis of TACO1-mediated efficient mitochondrial translation Nature Communications |
| Equivalence Class |
NR_all_93855.31
BGSU version: 4.49 |
| Compound | NAD |
| Residue | . / 1701 |
| Chain | ZJ / AA |
| Non-redundant | True |
| Interacting RNA chains | EC/AA |
| RNA environment detailled | protein, ion |
| RNA environment global | RNA/Protein |
| RNA family chains | EC/AA: rRNA |
| RNA family global | rRNA |
| Volume | 884.25 Å3 |
| Hydrophobicity | 0.145 |
| Hydrophilicity | 1.537 |
| Buriedness | 0.820 |
| Don/acc character | 0.705 |
| SiteScore | 1.082 |
| D Score | 0.931 |
| Kd | — |
| Compound | SPM |
| Residue | . / 1702 |
| Chain | AK / AA |
| Non-redundant | True |
| Interacting RNA chains | EC/AA |
| RNA environment detailled | ion |
| RNA environment global | RNA |
| RNA family chains | EC/AA: rRNA |
| RNA family global | rRNA |
| Volume | 787.53 Å3 |
| Hydrophobicity | 0.160 |
| Hydrophilicity | 1.152 |
| Buriedness | 0.805 |
| Don/acc character | 3.324 |
| SiteScore | 1.221 |
| D Score | 1.047 |
| Kd | — |
| Compound | SPM |
| Residue | . / 1781 |
| Chain | BN / AA |
| Non-redundant | True |
| Interacting RNA chains | EC/AA |
| RNA environment detailled | ion |
| RNA environment global | RNA |
| RNA family chains | EC/AA: rRNA |
| RNA family global | rRNA |
| Volume | 237.36 Å3 |
| Hydrophobicity | 0.254 |
| Hydrophilicity | 0.998 |
| Buriedness | 0.725 |
| Don/acc character | 4.371 |
| SiteScore | 0.842 |
| D Score | 0.598 |
| Kd | — |