Complex 9pgf
System information
| Experimental technique | Electron Microscopy |
| Experimental resolution | 2.93 |
| System mass | 3076.89 kDa |
| Deposition year | 2025 |
| Molecule type | RNA/Protein |
| # RNA entities | 1 |
| Organism | Homo |
| RCSB PDB Entry | 9pgf |
| Reference | Wang Shuhui, Brischigliaro Michele, Zhang Yuekang, Wu Chunxiang, Zheng Wei, Barrientos Antoni, Xiong Yong. . Structural basis of TACO1-mediated efficient mitochondrial translation Nature Communications |
| Equivalence Class |
NR_all_93855.31
BGSU version: 4.49 |
| Compound | NAD |
| Residue | . / 1701 |
| Chain | YJ / AA |
| Non-redundant | True |
| Interacting RNA chains | CC/AA |
| RNA environment detailled | protein, ion |
| RNA environment global | RNA/Protein |
| RNA family chains | CC/AA: rRNA |
| RNA family global | rRNA |
| Volume | 575.90 Å3 |
| Hydrophobicity | 0.115 |
| Hydrophilicity | 1.477 |
| Buriedness | 0.698 |
| Don/acc character | 0.672 |
| SiteScore | 1.000 |
| D Score | 0.877 |
| Kd | — |
| Compound | SPM |
| Residue | . / 1702 |
| Chain | ZJ / AA |
| Non-redundant | True |
| Interacting RNA chains | CC/AA |
| RNA environment detailled | ion |
| RNA environment global | RNA |
| RNA family chains | CC/AA: rRNA |
| RNA family global | rRNA |
| Volume | 807.42 Å3 |
| Hydrophobicity | 0.131 |
| Hydrophilicity | 1.134 |
| Buriedness | 0.809 |
| Don/acc character | 3.238 |
| SiteScore | 1.224 |
| D Score | 1.056 |
| Kd | — |
| Compound | SPM |
| Residue | . / 1782 |
| Chain | BN / AA |
| Non-redundant | True |
| Interacting RNA chains | CC/AA |
| RNA environment detailled | protein, other |
| RNA environment global | RNA/Other |
| RNA family chains | CC/AA: rRNA |
| RNA family global | rRNA |
| Volume | 207.17 Å3 |
| Hydrophobicity | 0.074 |
| Hydrophilicity | 1.516 |
| Buriedness | 0.859 |
| Don/acc character | 2.034 |
| SiteScore | 0.784 |
| D Score | 0.452 |
| Kd | — |
| Compound | SPM |
| Residue | . / 1784 |
| Chain | DN / AA |
| Non-redundant | True |
| Interacting RNA chains | CC/AA |
| RNA environment detailled | protein, ion, other |
| RNA environment global | RNA/Other |
| RNA family chains | CC/AA: rRNA |
| RNA family global | rRNA |
| Volume | 827.32 Å3 |
| Hydrophobicity | 0.182 |
| Hydrophilicity | 1.305 |
| Buriedness | 0.838 |
| Don/acc character | 2.239 |
| SiteScore | 1.243 |
| D Score | 1.017 |
| Kd | — |