HARIBOSS

Harnessing RIBOnucleic acid - Small molecules Structures

Complex 9pgf

System information

Experimental technique Electron Microscopy
Experimental resolution 2.93
System mass 3076.89 kDa
Deposition year 2025
Molecule type RNA/Protein
# RNA entities 1
Organism Homo
RCSB PDB Entry 9pgf
Reference Wang Shuhui, Brischigliaro Michele, Zhang Yuekang, Wu Chunxiang, Zheng Wei, Barrientos Antoni, Xiong Yong. . Structural basis of TACO1-mediated efficient mitochondrial translation Nature Communications

Compound NAD
Residue . / 1701
Chain YJ / AA
Non-redundant True
Interacting RNA chains CC/AA
Volume 575.90 Å3
Hydrophobicity 0.115
Hydrophilicity 1.477
Buriedness 0.698
Don/acc character 0.672
SiteScore 1.000
D Score 0.877

Compound SPM
Residue . / 1702
Chain ZJ / AA
Non-redundant True
Interacting RNA chains CC/AA
Volume 807.42 Å3
Hydrophobicity 0.131
Hydrophilicity 1.134
Buriedness 0.809
Don/acc character 3.238
SiteScore 1.224
D Score 1.056

Compound SPM
Residue . / 1782
Chain BN / AA
Non-redundant True
Interacting RNA chains CC/AA
Volume 207.17 Å3
Hydrophobicity 0.074
Hydrophilicity 1.516
Buriedness 0.859
Don/acc character 2.034
SiteScore 0.784
D Score 0.452

Compound SPM
Residue . / 1784
Chain DN / AA
Non-redundant True
Interacting RNA chains CC/AA
Volume 827.32 Å3
Hydrophobicity 0.182
Hydrophilicity 1.305
Buriedness 0.838
Don/acc character 2.239
SiteScore 1.243
D Score 1.017