HARIBOSS

Harnessing RIBOnucleic acid - Small molecules Structures

Complex 9pg8

System information

Experimental technique Electron Microscopy
Experimental resolution 3.06
System mass 3138.14 kDa
Deposition year 2025
Molecule type RNA/Protein
# RNA entities 1
Organism Homo
RCSB PDB Entry 9pg8
Reference Wang Shuhui, Brischigliaro Michele, Zhang Yuekang, Wu Chunxiang, Zheng Wei, Barrientos Antoni, Xiong Yong. . Structural basis of TACO1-mediated efficient mitochondrial translation Nature Communications

Compound NAD
Residue . / 1701
Chain ZJ / AA
Non-redundant True
Interacting RNA chains DC/AA
Volume 587.56 Å3
Hydrophobicity 0.109
Hydrophilicity 1.460
Buriedness 0.681
Don/acc character 0.678
SiteScore 0.989
D Score 0.873

Compound SPM
Residue . / 1702
Chain AK / AA
Non-redundant True
Interacting RNA chains DC/AA
Volume 846.52 Å3
Hydrophobicity 0.141
Hydrophilicity 1.187
Buriedness 0.803
Don/acc character 2.222
SiteScore 1.220
D Score 1.035

Compound SPM
Residue . / 1782
Chain CN / AA
Non-redundant True
Interacting RNA chains DC/AA
Volume 190.02 Å3
Hydrophobicity 0.048
Hydrophilicity 1.400
Buriedness 0.828
Don/acc character 2.239
SiteScore 0.712
D Score 0.450

Compound SPM
Residue . / 1785
Chain FN / AA
Non-redundant True
Interacting RNA chains DC/AA
Volume 869.85 Å3
Hydrophobicity 0.105
Hydrophilicity 1.705
Buriedness 0.818
Don/acc character 1.142
SiteScore 1.230
D Score 0.875