Complex 9pg8
System information
| Experimental technique | Electron Microscopy |
| Experimental resolution | 3.06 |
| System mass | 3138.14 kDa |
| Deposition year | 2025 |
| Molecule type | RNA/Protein |
| # RNA entities | 1 |
| Organism | Homo |
| RCSB PDB Entry | 9pg8 |
| Reference | Wang Shuhui, Brischigliaro Michele, Zhang Yuekang, Wu Chunxiang, Zheng Wei, Barrientos Antoni, Xiong Yong. . Structural basis of TACO1-mediated efficient mitochondrial translation Nature Communications |
| Equivalence Class |
NR_all_93855.31
BGSU version: 4.49 |
| Compound | NAD |
| Residue | . / 1701 |
| Chain | ZJ / AA |
| Non-redundant | True |
| Interacting RNA chains | DC/AA |
| RNA environment detailled | protein, ion |
| RNA environment global | RNA/Protein |
| RNA family chains | DC/AA: rRNA |
| RNA family global | rRNA |
| Volume | 587.56 Å3 |
| Hydrophobicity | 0.109 |
| Hydrophilicity | 1.460 |
| Buriedness | 0.681 |
| Don/acc character | 0.678 |
| SiteScore | 0.989 |
| D Score | 0.873 |
| Kd | — |
| Compound | SPM |
| Residue | . / 1702 |
| Chain | AK / AA |
| Non-redundant | True |
| Interacting RNA chains | DC/AA |
| RNA environment detailled | ion |
| RNA environment global | RNA |
| RNA family chains | DC/AA: rRNA |
| RNA family global | rRNA |
| Volume | 846.52 Å3 |
| Hydrophobicity | 0.141 |
| Hydrophilicity | 1.187 |
| Buriedness | 0.803 |
| Don/acc character | 2.222 |
| SiteScore | 1.220 |
| D Score | 1.035 |
| Kd | — |
| Compound | SPM |
| Residue | . / 1782 |
| Chain | CN / AA |
| Non-redundant | True |
| Interacting RNA chains | DC/AA |
| RNA environment detailled | other |
| RNA environment global | RNA/Other |
| RNA family chains | DC/AA: rRNA |
| RNA family global | rRNA |
| Volume | 190.02 Å3 |
| Hydrophobicity | 0.048 |
| Hydrophilicity | 1.400 |
| Buriedness | 0.828 |
| Don/acc character | 2.239 |
| SiteScore | 0.712 |
| D Score | 0.450 |
| Kd | — |
| Compound | SPM |
| Residue | . / 1785 |
| Chain | FN / AA |
| Non-redundant | True |
| Interacting RNA chains | DC/AA |
| RNA environment detailled | protein, ion, other |
| RNA environment global | RNA/Other |
| RNA family chains | DC/AA: rRNA |
| RNA family global | rRNA |
| Volume | 869.85 Å3 |
| Hydrophobicity | 0.105 |
| Hydrophilicity | 1.705 |
| Buriedness | 0.818 |
| Don/acc character | 1.142 |
| SiteScore | 1.230 |
| D Score | 0.875 |
| Kd | — |