Complex 9pfs
Legend
Pocket colors by molecule type
RNA
Protein
DNA
These colors appear when a pocket is selected (the structure fades to show the pocket surface). Colors from the molecule-type palette (RNA / protein / DNA).
System information
| Experimental technique | Electron Microscopy |
| Experimental resolution | 2.75 |
| System mass | 364.52 kDa |
| Deposition year | 2025 |
| Molecule type | RNA/Protein |
| # RNA entities | 1 |
| Organism | Orthopneumovirus |
| RCSB PDB Entry | 9pfs |
| Reference | Cao Dongdong, Chen Zhenhang, Gao Yunrong, Roesler Claire, Gooneratne Inesh, Mera Cristopher, Zhuang Lisa, Slack Julia, Nudell-Cook Elijah, Vy Jenny, Berry Jasmine, Royal Maurice, Shaik Masthan, Youngs Ryan, Liang Bo. 2026. Orchestrated and dynamic nucleotide addition cycle during respiratory syncytial virus early-stage elongation Nature Communications |
| Equivalence Class |
NR_all_39409.1
BGSU version: 4.52 |
Pockets List
Legend
Cell colors for SiteScore and D Score:
Favourable
Intermediate
Unfavourable
Not available
| Score | Threshold | Meaning |
|---|---|---|
| SiteScore | < 0.8 | Non-drug binding site |
| SiteScore | 0.8 – 1.0 | Potential drug binding site |
| SiteScore | > 1.0 | Promising binding site |
| D Score | < 0.83 | Undruggable |
| D Score | 0.83 – 0.98 | Difficult |
| D Score | > 0.98 | Druggable |
Tick a pocket below to highlight it in the 3D structure above.
| Compound | ZAN |
| Residue | . / 2203 |
| Chain | J / A |
| Non-redundant | True |
| Interacting RNA chains | G/T, F/P |
| RNA environment detailled | protein, ion |
| RNA environment global | RNA/Protein |
| RNA family chains | F/P: unknown, G/T: unknown |
| RNA family global | unknown |
| Volume | 713.44 Å3 |
| Hydrophobicity | 0.740 |
| Hydrophilicity | 1.346 |
| Buriedness | 0.900 |
| Don/acc character | 0.865 |
| SiteScore | 1.135 |
| D Score | 1.041 |
| Kd | — |