HARIBOSS

Harnessing RIBOnucleic acid - Small molecules Structures

Complex 9p9h

System information

Experimental technique Electron Microscopy
Experimental resolution 2.84
System mass 3343.54 kDa
Deposition year 2025
Molecule type RNA/Protein
# RNA entities 1
Organism Homo
RCSB PDB Entry 9p9h
Reference Zheng Wei, Zhang Yuekang, Wang Jimin, Wang Shuhui, Chai Pengxin, Bailey Elizabeth J., Zhu Chenghao, Guo Wangbiao, Devarkar Swapnil C., Wu Shenping, Lin Jianfeng, Zhang Kai, Liu Jun, Lomakin Ivan B., Xiong Yong. . Visualizing the translation landscape in human cells at high resolution Nature Communications

Compound SPM
Residue . / 5258
Chain II / L5
Non-redundant True
Interacting RNA chains B/L5
Volume 360.15 Å3
Hydrophobicity 0.442
Hydrophilicity 0.986
Buriedness 0.683
Don/acc character 2.128
SiteScore 1.151
D Score 1.029

Compound SPM
Residue . / 5262
Chain MI / L5
Non-redundant True
Interacting RNA chains B/L5
Volume -
Hydrophobicity -
Hydrophilicity -
Buriedness -
Don/acc character -
SiteScore -
D Score -

Compound SPM
Residue . / 5263
Chain NI / L5
Non-redundant True
Interacting RNA chains B/L5
Volume -
Hydrophobicity -
Hydrophilicity -
Buriedness -
Don/acc character -
SiteScore -
D Score -

Compound SPM
Residue . / 5266
Chain QI / L5
Non-redundant True
Interacting RNA chains B/L5
Volume 782.38 Å3
Hydrophobicity 0.129
Hydrophilicity 1.908
Buriedness 0.846
Don/acc character 1.257
SiteScore 1.099
D Score 0.826

Compound SPM
Residue . / 5286
Chain KJ / L5
Non-redundant True
Interacting RNA chains B/L5
Volume 373.87 Å3
Hydrophobicity 0.114
Hydrophilicity 1.828
Buriedness 0.818
Don/acc character 0.805
SiteScore 0.799
D Score 0.475

Compound SPM
Residue . / 5289
Chain NJ / L5
Non-redundant True
Interacting RNA chains B/L5
Volume 1076.33 Å3
Hydrophobicity 0.074
Hydrophilicity 1.611
Buriedness 0.819
Don/acc character 0.993
SiteScore 1.081
D Score 0.906

Compound SPM
Residue . / 5290
Chain OJ / L5
Non-redundant True
Interacting RNA chains B/L5
Volume 668.51 Å3
Hydrophobicity 0.222
Hydrophilicity 1.201
Buriedness 0.777
Don/acc character 1.366
SiteScore 1.053
D Score 1.015