HARIBOSS

Harnessing RIBOnucleic acid - Small molecules Structures

Complex 9p8h

System information

Experimental technique Electron Microscopy
Experimental resolution 2.98
System mass 3332.61 kDa
Deposition year 2025
Molecule type RNA/Protein
# RNA entities 1
Organism Homo
RCSB PDB Entry 9p8h
Reference Zheng Wei, Zhang Yuekang, Wang Jimin, Wang Shuhui, Chai Pengxin, Bailey Elizabeth J., Zhu Chenghao, Guo Wangbiao, Devarkar Swapnil C., Wu Shenping, Lin Jianfeng, Zhang Kai, Liu Jun, Lomakin Ivan B., Xiong Yong. . Visualizing the translation landscape in human cells at high resolution Nature Communications

Compound SPM
Residue . / 5258
Chain JJ / L5
Non-redundant True
Interacting RNA chains MA/L5
Volume 353.29 Å3
Hydrophobicity 0.432
Hydrophilicity 0.944
Buriedness 0.680
Don/acc character 1.640
SiteScore 1.157
D Score 1.040

Compound SPM
Residue . / 5263
Chain OJ / L5
Non-redundant True
Interacting RNA chains MA/L5
Volume -
Hydrophobicity -
Hydrophilicity -
Buriedness -
Don/acc character -
SiteScore -
D Score -

Compound SPM
Residue . / 5264
Chain PJ / L5
Non-redundant True
Interacting RNA chains MA/L5
Volume -
Hydrophobicity -
Hydrophilicity -
Buriedness -
Don/acc character -
SiteScore -
D Score -

Compound SPM
Residue . / 5267
Chain SJ / L5
Non-redundant True
Interacting RNA chains MA/L5
Volume 895.57 Å3
Hydrophobicity 0.115
Hydrophilicity 1.853
Buriedness 0.831
Don/acc character 1.261
SiteScore 1.089
D Score 0.835

Compound SPM
Residue . / 5288
Chain NK / L5
Non-redundant True
Interacting RNA chains MA/L5
Volume 447.96 Å3
Hydrophobicity 0.329
Hydrophilicity 1.291
Buriedness 0.848
Don/acc character 1.198
SiteScore 0.906
D Score 0.778

Compound SPM
Residue . / 5291
Chain QK / L5
Non-redundant True
Interacting RNA chains MA/L5
Volume 1229.31 Å3
Hydrophobicity 0.146
Hydrophilicity 1.532
Buriedness 0.807
Don/acc character 0.963
SiteScore 1.073
D Score 0.925

Compound SPM
Residue . / 5292
Chain RK / L5
Non-redundant True
Interacting RNA chains MA/L5
Volume 550.17 Å3
Hydrophobicity 0.252
Hydrophilicity 1.181
Buriedness 0.770
Don/acc character 1.269
SiteScore 1.048
D Score 1.017