HARIBOSS

Harnessing RIBOnucleic acid - Small molecules Structures

Complex 9p7x

System information

Experimental technique Electron Microscopy
Experimental resolution 2.83
System mass 3275.42 kDa
Deposition year 2025
Molecule type RNA/Protein
# RNA entities 1
Organism Homo
RCSB PDB Entry 9p7x
Reference Zheng Wei, Zhang Yuekang, Wang Jimin, Wang Shuhui, Chai Pengxin, Bailey Elizabeth J., Zhu Chenghao, Guo Wangbiao, Devarkar Swapnil C., Wu Shenping, Lin Jianfeng, Zhang Kai, Liu Jun, Lomakin Ivan B., Xiong Yong. . Visualizing the translation landscape in human cells at high resolution Nature Communications

Compound SPM
Residue . / 5259
Chain MJ / L5
Non-redundant True
Interacting RNA chains NA/L5
Volume 348.15 Å3
Hydrophobicity 0.462
Hydrophilicity 1.077
Buriedness 0.689
Don/acc character 1.611
SiteScore 1.144
D Score 1.002

Compound SPM
Residue . / 5263
Chain QJ / L5
Non-redundant True
Interacting RNA chains NA/L5
Volume 122.11 Å3
Hydrophobicity 0.150
Hydrophilicity 1.140
Buriedness 0.608
Don/acc character 1.412
SiteScore 0.758
D Score 0.508

Compound SPM
Residue . / 5264
Chain RJ / L5
Non-redundant True
Interacting RNA chains NA/L5
Volume -
Hydrophobicity -
Hydrophilicity -
Buriedness -
Don/acc character -
SiteScore -
D Score -

Compound SPM
Residue . / 5267
Chain UJ / L5
Non-redundant True
Interacting RNA chains NA/L5
Volume 821.49 Å3
Hydrophobicity 0.139
Hydrophilicity 1.915
Buriedness 0.840
Don/acc character 1.081
SiteScore 1.095
D Score 0.820

Compound SPM
Residue . / 5287
Chain OK / L5
Non-redundant True
Interacting RNA chains NA/L5
Volume 734.02 Å3
Hydrophobicity 0.199
Hydrophilicity 1.476
Buriedness 0.830
Don/acc character 1.018
SiteScore 1.070
D Score 0.933

Compound SPM
Residue . / 5290
Chain RK / L5
Non-redundant True
Interacting RNA chains NA/L5
Volume 1359.65 Å3
Hydrophobicity 0.097
Hydrophilicity 1.576
Buriedness 0.824
Don/acc character 1.059
SiteScore 1.084
D Score 0.920

Compound SPM
Residue . / 5291
Chain SK / L5
Non-redundant True
Interacting RNA chains NA/L5
Volume 230.15 Å3
Hydrophobicity 0.452
Hydrophilicity 1.005
Buriedness 0.761
Don/acc character 1.489
SiteScore 0.704
D Score 0.626