HARIBOSS

Harnessing RIBOnucleic acid - Small molecules Structures

Complex 9p7w

System information

Experimental technique Electron Microscopy
Experimental resolution 2.93
System mass 3251.32 kDa
Deposition year 2025
Molecule type RNA/Protein
# RNA entities 1
Organism Homo
RCSB PDB Entry 9p7w
Reference Zheng Wei, Zhang Yuekang, Wang Jimin, Wang Shuhui, Chai Pengxin, Bailey Elizabeth J., Zhu Chenghao, Guo Wangbiao, Devarkar Swapnil C., Wu Shenping, Lin Jianfeng, Zhang Kai, Liu Jun, Lomakin Ivan B., Xiong Yong. . Visualizing the translation landscape in human cells at high resolution Nature Communications

Compound SPM
Residue . / 5258
Chain KJ / L5
Non-redundant True
Interacting RNA chains NA/L5
Volume 348.49 Å3
Hydrophobicity 0.528
Hydrophilicity 1.101
Buriedness 0.728
Don/acc character 1.303
SiteScore 1.170
D Score 1.018

Compound SPM
Residue . / 5263
Chain PJ / L5
Non-redundant True
Interacting RNA chains NA/L5
Volume 97.76 Å3
Hydrophobicity 0.000
Hydrophilicity 1.671
Buriedness 0.624
Don/acc character 2.566
SiteScore 0.782
D Score 0.362

Compound SPM
Residue . / 5264
Chain QJ / L5
Non-redundant True
Interacting RNA chains NA/L5
Volume -
Hydrophobicity -
Hydrophilicity -
Buriedness -
Don/acc character -
SiteScore -
D Score -

Compound SPM
Residue . / 5267
Chain TJ / L5
Non-redundant True
Interacting RNA chains NA/L5
Volume 756.66 Å3
Hydrophobicity 0.123
Hydrophilicity 1.840
Buriedness 0.847
Don/acc character 1.260
SiteScore 1.249
D Score 0.848

Compound SPM
Residue . / 5288
Chain OK / L5
Non-redundant True
Interacting RNA chains NA/L5
Volume 350.89 Å3
Hydrophobicity 0.074
Hydrophilicity 1.982
Buriedness 0.818
Don/acc character 0.835
SiteScore 0.742
D Score 0.351

Compound SPM
Residue . / 5291
Chain RK / L5
Non-redundant True
Interacting RNA chains NA/L5
Volume 1197.07 Å3
Hydrophobicity 0.091
Hydrophilicity 1.613
Buriedness 0.829
Don/acc character 0.933
SiteScore 1.087
D Score 0.911

Compound SPM
Residue . / 5292
Chain SK / L5
Non-redundant True
Interacting RNA chains NA/L5
Volume 626.32 Å3
Hydrophobicity 0.175
Hydrophilicity 1.223
Buriedness 0.783
Don/acc character 1.559
SiteScore 1.057
D Score 1.011