HARIBOSS

Harnessing RIBOnucleic acid - Small molecules Structures

Complex 9p7o

System information

Experimental technique Electron Microscopy
Experimental resolution 2.65
System mass 3325.22 kDa
Deposition year 2025
Molecule type RNA/Protein
# RNA entities 1
Organism Homo
RCSB PDB Entry 9p7o
Reference Zheng Wei, Zhang Yuekang, Wang Jimin, Wang Shuhui, Chai Pengxin, Bailey Elizabeth J., Zhu Chenghao, Guo Wangbiao, Devarkar Swapnil C., Wu Shenping, Lin Jianfeng, Zhang Kai, Liu Jun, Lomakin Ivan B., Xiong Yong. . Visualizing the translation landscape in human cells at high resolution Nature Communications

Compound SPM
Residue . / 5259
Chain KI / L5
Non-redundant True
Interacting RNA chains E/L5
Volume 349.86 Å3
Hydrophobicity 0.419
Hydrophilicity 0.978
Buriedness 0.687
Don/acc character 1.788
SiteScore 1.155
D Score 1.033

Compound SPM
Residue . / 5264
Chain PI / L5
Non-redundant True
Interacting RNA chains E/L5
Volume 120.39 Å3
Hydrophobicity 0.178
Hydrophilicity 1.115
Buriedness 0.597
Don/acc character 1.915
SiteScore 0.841
D Score 0.625

Compound SPM
Residue . / 5265
Chain QI / L5
Non-redundant True
Interacting RNA chains E/L5
Volume -
Hydrophobicity -
Hydrophilicity -
Buriedness -
Don/acc character -
SiteScore -
D Score -

Compound SPM
Residue . / 5268
Chain TI / L5
Non-redundant True
Interacting RNA chains E/L5
Volume 753.57 Å3
Hydrophobicity 0.121
Hydrophilicity 1.916
Buriedness 0.849
Don/acc character 1.186
SiteScore 1.101
D Score 0.825

Compound SPM
Residue . / 5289
Chain OJ / L5
Non-redundant True
Interacting RNA chains E/L5
Volume 543.31 Å3
Hydrophobicity 0.158
Hydrophilicity 1.671
Buriedness 0.843
Don/acc character 0.686
SiteScore 0.994
D Score 0.770

Compound SPM
Residue . / 5292
Chain RJ / L5
Non-redundant True
Interacting RNA chains E/L5
Volume 1273.90 Å3
Hydrophobicity 0.086
Hydrophilicity 1.641
Buriedness 0.820
Don/acc character 1.261
SiteScore 1.082
D Score 0.897

Compound SPM
Residue . / 5293
Chain SJ / L5
Non-redundant True
Interacting RNA chains E/L5
Volume 620.83 Å3
Hydrophobicity 0.182
Hydrophilicity 1.260
Buriedness 0.781
Don/acc character 1.171
SiteScore 1.055
D Score 0.998