Complex 9p6p
Legend
Pocket colors by molecule type
RNA
Protein
DNA
These colors appear when a pocket is selected (the structure fades to show the pocket surface). Colors from the molecule-type palette (RNA / protein / DNA).
System information
| Experimental technique | X-ray |
| Experimental resolution | 1.95 |
| System mass | 103.86 kDa |
| Deposition year | 2025 |
| Molecule type | RNA/Protein |
| # RNA entities | 1 |
| Organism | Betacoronavirus |
| RCSB PDB Entry | 9p6p |
| Equivalence Class |
NR_all_20296.2
BGSU version: 4.52 |
Pockets List
Legend
Cell colors for SiteScore and D Score:
Favourable
Intermediate
Unfavourable
Not available
| Score | Threshold | Meaning |
|---|---|---|
| SiteScore | < 0.8 | Non-drug binding site |
| SiteScore | 0.8 – 1.0 | Potential drug binding site |
| SiteScore | > 1.0 | Promising binding site |
| D Score | < 0.83 | Undruggable |
| D Score | 0.83 – 0.98 | Difficult |
| D Score | > 0.98 | Druggable |
Tick a pocket below to highlight it in the 3D structure above.
| Compound | SAH |
| Residue | . / 301 |
| Chain | G / A |
| Non-redundant | False |
| Interacting RNA chains | E/E |
| RNA environment detailled | protein |
| RNA environment global | RNA/Protein |
| RNA family chains | E/E: unknown |
| RNA family global | unknown |
| Volume | 257.59 Å3 |
| Hydrophobicity | 0.524 |
| Hydrophilicity | 1.108 |
| Buriedness | 0.722 |
| Don/acc character | 1.062 |
| SiteScore | 1.016 |
| D Score | 1.012 |
| Kd | — |
| Compound | SAH |
| Residue | . / 301 |
| Chain | X / C |
| Non-redundant | False |
| Interacting RNA chains | F/G |
| RNA environment detailled | protein |
| RNA environment global | RNA/Protein |
| RNA family chains | F/G: unknown |
| RNA family global | unknown |
| Volume | 319.68 Å3 |
| Hydrophobicity | 0.645 |
| Hydrophilicity | 1.174 |
| Buriedness | 0.744 |
| Don/acc character | 1.143 |
| SiteScore | 1.031 |
| D Score | 1.004 |
| Kd | — |