HARIBOSS

Harnessing RIBOnucleic acid - Small molecules Structures

Complex 9o3i

System information

Experimental technique X-ray
Experimental resolution 2.80
System mass 4569.77 kDa
Deposition year 2025
Molecule type RNA/Protein
# RNA entities 1
Organism Thermus
RCSB PDB Entry 9o3i
Reference Syroegin Egor A., Aleksandrova Elena V., Kruglov Artem A., Paranjpe Madhura N., Svetlov Maxim S., Polikanov Yury S.. . Structural insights into context-specific inhibition of bacterial translation by macrolides []
Equivalence Class NR_all_97519.80
BGSU version: 4.49

Compound TEL
Residue . / 4082
Chain ZSA / 1A
Non-redundant True
Interacting RNA chains A/1A
RNA environment detailled protein, ion
RNA environment global RNA/Protein
RNA family chains A/1A: rRNA
RNA family global rRNA
Volume 113.88 Å3
Hydrophobicity 0.256
Hydrophilicity 1.003
Buriedness 0.561
Don/acc character 0.395
SiteScore 0.854
D Score 0.687
Kd

Compound TEL
Residue . / 3826
Chain WPC / 2A
Non-redundant True
Interacting RNA chains FB/2A
RNA environment detailled protein
RNA environment global RNA/Protein
RNA family chains FB/2A: rRNA
RNA family global rRNA
Volume 111.48 Å3
Hydrophobicity 0.206
Hydrophilicity 1.276
Buriedness 0.594
Don/acc character 0.461
SiteScore 0.628
D Score 0.612
Kd